Hb_001903_020

Information

Type -
Description -
Location Contig1903: 4249-4500
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001903_020 0.0 - - -
2 Hb_188168_010 0.0369453495 - - Arylacetamide deacetylase, putative [Ricinus communis]
3 Hb_002342_040 0.0408189182 - - FERONIA, partial [Arabis alpina]
4 Hb_122911_010 0.0408502239 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
5 Hb_000045_270 0.0417605473 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010452_030 0.0424507443 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
7 Hb_001100_020 0.0428461676 - - -
8 Hb_005426_010 0.0429521332 - - polyprotein [Oryza australiensis]
9 Hb_007592_010 0.0430018703 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
10 Hb_008092_010 0.0437447942 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
11 Hb_003702_020 0.0439099147 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
12 Hb_000370_050 0.0439232997 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_002400_110 0.0447436288 - - conserved hypothetical protein [Ricinus communis]
14 Hb_072149_010 0.0448449468 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
15 Hb_004944_030 0.0455853452 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
16 Hb_042239_010 0.0457079746 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
17 Hb_001136_140 0.0459762733 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
18 Hb_048653_010 0.0462969735 - - PREDICTED: mavicyanin [Jatropha curcas]
19 Hb_013654_020 0.0463650224 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
20 Hb_008221_010 0.0482139814 - - hypothetical protein JCGZ_10961 [Jatropha curcas]

Gene co-expression network

sample Hb_001903_020 Hb_001903_020 Hb_188168_010 Hb_188168_010 Hb_001903_020--Hb_188168_010 Hb_002342_040 Hb_002342_040 Hb_001903_020--Hb_002342_040 Hb_122911_010 Hb_122911_010 Hb_001903_020--Hb_122911_010 Hb_000045_270 Hb_000045_270 Hb_001903_020--Hb_000045_270 Hb_010452_030 Hb_010452_030 Hb_001903_020--Hb_010452_030 Hb_001100_020 Hb_001100_020 Hb_001903_020--Hb_001100_020 Hb_188168_010--Hb_010452_030 Hb_188168_010--Hb_000045_270 Hb_188168_010--Hb_001100_020 Hb_188168_010--Hb_122911_010 Hb_002400_110 Hb_002400_110 Hb_188168_010--Hb_002400_110 Hb_072149_010 Hb_072149_010 Hb_188168_010--Hb_072149_010 Hb_002342_040--Hb_122911_010 Hb_005426_010 Hb_005426_010 Hb_002342_040--Hb_005426_010 Hb_007592_010 Hb_007592_010 Hb_002342_040--Hb_007592_010 Hb_008092_010 Hb_008092_010 Hb_002342_040--Hb_008092_010 Hb_002342_040--Hb_000045_270 Hb_003702_020 Hb_003702_020 Hb_002342_040--Hb_003702_020 Hb_122911_010--Hb_000045_270 Hb_122911_010--Hb_010452_030 Hb_122911_010--Hb_001100_020 Hb_122911_010--Hb_002400_110 Hb_122911_010--Hb_072149_010 Hb_000045_270--Hb_010452_030 Hb_000045_270--Hb_001100_020 Hb_000045_270--Hb_002400_110 Hb_000045_270--Hb_072149_010 Hb_004944_030 Hb_004944_030 Hb_000045_270--Hb_004944_030 Hb_010452_030--Hb_001100_020 Hb_010452_030--Hb_002400_110 Hb_010452_030--Hb_072149_010 Hb_010452_030--Hb_004944_030 Hb_001100_020--Hb_002400_110 Hb_001100_020--Hb_072149_010 Hb_001100_020--Hb_004944_030 Hb_001136_140 Hb_001136_140 Hb_001100_020--Hb_001136_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 568.832 0 0 2.64331 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 228.313 0

CAGE analysis