Hb_000696_180

Information

Type -
Description -
Location Contig696: 96497-98495
Sequence    

Annotation

kegg
ID rcu:RCOM_0362160
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_002531151.1
description cysteine protease, putative [Ricinus communis]
swissprot
ID Q9FJ47
description Senescence-specific cysteine protease SAG12 OS=Arabidopsis thaliana GN=SAG12 PE=1 SV=1
trembl
ID B9SYT2
description Cysteine protease, putative OS=Ricinus communis GN=RCOM_0362160 PE=3 SV=1
Gene Ontology
ID GO:0008234
description senescence-specific cysteine protease sag39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_180 0.0 - - cysteine protease, putative [Ricinus communis]
2 Hb_159542_010 0.0014497582 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
3 Hb_011444_050 0.0030019901 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
4 Hb_000329_240 0.0035169399 transcription factor TF Family: PLATZ zinc ion binding protein, putative [Ricinus communis]
5 Hb_073174_010 0.0037543969 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
6 Hb_000938_010 0.0039694598 - - polyprotein [Oryza australiensis]
7 Hb_163720_010 0.004485473 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
8 Hb_071079_030 0.0052211987 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
9 Hb_001031_070 0.0056091384 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
10 Hb_000441_240 0.0058009869 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
11 Hb_001900_040 0.0060643753 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
12 Hb_000518_010 0.0061869108 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17300g [Populus trichocarpa]
13 Hb_003687_050 0.0063450907 - - conserved hypothetical protein [Ricinus communis]
14 Hb_188247_020 0.0064020647 - - hypothetical protein, partial [Cecembia lonarensis]
15 Hb_002596_100 0.0064832626 - - -
16 Hb_150093_010 0.006628466 - - putative polyprotein [Oryza sativa Japonica Group]
17 Hb_002326_160 0.0068029464 - - hypothetical protein JCGZ_04332 [Jatropha curcas]
18 Hb_001240_030 0.0071721026 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
19 Hb_001031_100 0.007536398 - - -
20 Hb_000724_010 0.0080521275 - - PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]

Gene co-expression network

sample Hb_000696_180 Hb_000696_180 Hb_159542_010 Hb_159542_010 Hb_000696_180--Hb_159542_010 Hb_011444_050 Hb_011444_050 Hb_000696_180--Hb_011444_050 Hb_000329_240 Hb_000329_240 Hb_000696_180--Hb_000329_240 Hb_073174_010 Hb_073174_010 Hb_000696_180--Hb_073174_010 Hb_000938_010 Hb_000938_010 Hb_000696_180--Hb_000938_010 Hb_163720_010 Hb_163720_010 Hb_000696_180--Hb_163720_010 Hb_159542_010--Hb_000938_010 Hb_071079_030 Hb_071079_030 Hb_159542_010--Hb_071079_030 Hb_001031_070 Hb_001031_070 Hb_159542_010--Hb_001031_070 Hb_000441_240 Hb_000441_240 Hb_159542_010--Hb_000441_240 Hb_159542_010--Hb_011444_050 Hb_011444_050--Hb_000329_240 Hb_011444_050--Hb_073174_010 Hb_011444_050--Hb_163720_010 Hb_001900_040 Hb_001900_040 Hb_011444_050--Hb_001900_040 Hb_000518_010 Hb_000518_010 Hb_011444_050--Hb_000518_010 Hb_000329_240--Hb_073174_010 Hb_000329_240--Hb_163720_010 Hb_000329_240--Hb_001900_040 Hb_000329_240--Hb_000518_010 Hb_188247_020 Hb_188247_020 Hb_000329_240--Hb_188247_020 Hb_073174_010--Hb_163720_010 Hb_073174_010--Hb_001900_040 Hb_073174_010--Hb_000518_010 Hb_073174_010--Hb_188247_020 Hb_000938_010--Hb_071079_030 Hb_000938_010--Hb_001031_070 Hb_000938_010--Hb_000441_240 Hb_003687_050 Hb_003687_050 Hb_000938_010--Hb_003687_050 Hb_002596_100 Hb_002596_100 Hb_000938_010--Hb_002596_100 Hb_163720_010--Hb_001900_040 Hb_163720_010--Hb_000518_010 Hb_163720_010--Hb_188247_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0323124 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0303614 0

CAGE analysis