Hb_188247_020

Information

Type -
Description -
Location Contig188247: 5580-7317
Sequence    

Annotation

kegg
ID csv:101203928
description uncharacterized LOC101203928
nr
ID WP_040401547.1
description hypothetical protein, partial [Cecembia lonarensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O81506
description Putative retrotransposon protein OS=Arabidopsis thaliana GN=T7M24.7 PE=4 SV=1
Gene Ontology
ID GO:0003677
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188247_020 0.0 - - hypothetical protein, partial [Cecembia lonarensis]
2 Hb_000518_010 0.0002151569 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17300g [Populus trichocarpa]
3 Hb_150093_010 0.0002264046 - - putative polyprotein [Oryza sativa Japonica Group]
4 Hb_001900_040 0.000337694 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
5 Hb_002326_160 0.0004008878 - - hypothetical protein JCGZ_04332 [Jatropha curcas]
6 Hb_001240_030 0.0007700502 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
7 Hb_163720_010 0.0019166109 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
8 Hb_073174_010 0.0026476899 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
9 Hb_000329_240 0.0028851474 transcription factor TF Family: PLATZ zinc ion binding protein, putative [Ricinus communis]
10 Hb_011444_050 0.0034000973 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
11 Hb_000696_180 0.0064020647 - - cysteine protease, putative [Ricinus communis]
12 Hb_159542_010 0.0078517976 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_000938_010 0.0103714329 - - polyprotein [Oryza australiensis]
14 Hb_071079_030 0.0116231285 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
15 Hb_001031_070 0.0120110533 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
16 Hb_000441_240 0.0122028942 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
17 Hb_000349_130 0.0123059499 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
18 Hb_003687_050 0.0127469756 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002596_100 0.0128851416 - - -
20 Hb_001031_100 0.0139382292 - - -

Gene co-expression network

sample Hb_188247_020 Hb_188247_020 Hb_000518_010 Hb_000518_010 Hb_188247_020--Hb_000518_010 Hb_150093_010 Hb_150093_010 Hb_188247_020--Hb_150093_010 Hb_001900_040 Hb_001900_040 Hb_188247_020--Hb_001900_040 Hb_002326_160 Hb_002326_160 Hb_188247_020--Hb_002326_160 Hb_001240_030 Hb_001240_030 Hb_188247_020--Hb_001240_030 Hb_163720_010 Hb_163720_010 Hb_188247_020--Hb_163720_010 Hb_000518_010--Hb_001900_040 Hb_000518_010--Hb_150093_010 Hb_000518_010--Hb_002326_160 Hb_000518_010--Hb_001240_030 Hb_000518_010--Hb_163720_010 Hb_150093_010--Hb_002326_160 Hb_150093_010--Hb_001240_030 Hb_150093_010--Hb_001900_040 Hb_150093_010--Hb_163720_010 Hb_001900_040--Hb_002326_160 Hb_001900_040--Hb_001240_030 Hb_001900_040--Hb_163720_010 Hb_002326_160--Hb_001240_030 Hb_002326_160--Hb_163720_010 Hb_001240_030--Hb_163720_010 Hb_073174_010 Hb_073174_010 Hb_163720_010--Hb_073174_010 Hb_000329_240 Hb_000329_240 Hb_163720_010--Hb_000329_240 Hb_011444_050 Hb_011444_050 Hb_163720_010--Hb_011444_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0116818 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0106502 0

CAGE analysis