Hb_000938_010

Information

Type -
Description -
Location Contig938: 31789-34652
Sequence    

Annotation

kegg
ID tcc:TCM_040529
description hypothetical protein
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000938_010 0.0 - - polyprotein [Oryza australiensis]
2 Hb_071079_030 0.0012517479 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
3 Hb_001031_070 0.0016396913 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
4 Hb_000441_240 0.0018315417 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
5 Hb_003687_050 0.0023756517 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002596_100 0.0025138253 - - -
7 Hb_159542_010 0.0025197066 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
8 Hb_001031_100 0.0035669752 - - -
9 Hb_000696_180 0.0039694598 - - cysteine protease, putative [Ricinus communis]
10 Hb_000724_010 0.004082713 - - PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]
11 Hb_080359_020 0.0047868519 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
12 Hb_027556_050 0.0049514273 - - hypothetical protein PHAVU_001G166100g [Phaseolus vulgaris]
13 Hb_000345_090 0.0054525761 - - Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]
14 Hb_011444_050 0.006971421 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_000329_240 0.0074863634 transcription factor TF Family: PLATZ zinc ion binding protein, putative [Ricinus communis]
16 Hb_073174_010 0.0077238167 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
17 Hb_000705_320 0.0081420589 - - Transcriptional regulator SUPERMAN, putative [Ricinus communis]
18 Hb_163720_010 0.0084548805 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
19 Hb_001900_040 0.0100337511 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
20 Hb_000518_010 0.0101562839 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17300g [Populus trichocarpa]

Gene co-expression network

sample Hb_000938_010 Hb_000938_010 Hb_071079_030 Hb_071079_030 Hb_000938_010--Hb_071079_030 Hb_001031_070 Hb_001031_070 Hb_000938_010--Hb_001031_070 Hb_000441_240 Hb_000441_240 Hb_000938_010--Hb_000441_240 Hb_003687_050 Hb_003687_050 Hb_000938_010--Hb_003687_050 Hb_002596_100 Hb_002596_100 Hb_000938_010--Hb_002596_100 Hb_159542_010 Hb_159542_010 Hb_000938_010--Hb_159542_010 Hb_071079_030--Hb_001031_070 Hb_071079_030--Hb_000441_240 Hb_071079_030--Hb_003687_050 Hb_071079_030--Hb_002596_100 Hb_001031_100 Hb_001031_100 Hb_071079_030--Hb_001031_100 Hb_001031_070--Hb_000441_240 Hb_001031_070--Hb_003687_050 Hb_001031_070--Hb_002596_100 Hb_001031_070--Hb_001031_100 Hb_000441_240--Hb_003687_050 Hb_000441_240--Hb_002596_100 Hb_000441_240--Hb_001031_100 Hb_003687_050--Hb_002596_100 Hb_003687_050--Hb_001031_100 Hb_000724_010 Hb_000724_010 Hb_003687_050--Hb_000724_010 Hb_002596_100--Hb_001031_100 Hb_002596_100--Hb_000724_010 Hb_000696_180 Hb_000696_180 Hb_159542_010--Hb_000696_180 Hb_159542_010--Hb_071079_030 Hb_159542_010--Hb_001031_070 Hb_159542_010--Hb_000441_240 Hb_011444_050 Hb_011444_050 Hb_159542_010--Hb_011444_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00589305 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00564176 0

CAGE analysis