Hb_159542_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig159542: 594-976
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09900g
description hypothetical protein
nr
ID XP_012071293.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID U5FEX7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s09900g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159542_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_000696_180 0.0014497582 - - cysteine protease, putative [Ricinus communis]
3 Hb_000938_010 0.0025197066 - - polyprotein [Oryza australiensis]
4 Hb_071079_030 0.0037714504 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
5 Hb_001031_070 0.0041593919 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
6 Hb_000441_240 0.0043512413 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
7 Hb_011444_050 0.0044517416 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
8 Hb_003687_050 0.0048953481 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000329_240 0.0049666894 transcription factor TF Family: PLATZ zinc ion binding protein, putative [Ricinus communis]
10 Hb_002596_100 0.0050335208 - - -
11 Hb_073174_010 0.0052041453 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
12 Hb_163720_010 0.0059352178 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
13 Hb_001031_100 0.0060866628 - - -
14 Hb_000724_010 0.006602396 - - PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]
15 Hb_080359_020 0.0073065279 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
16 Hb_027556_050 0.0074711015 - - hypothetical protein PHAVU_001G166100g [Phaseolus vulgaris]
17 Hb_001900_040 0.0075141106 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
18 Hb_000518_010 0.0076366453 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17300g [Populus trichocarpa]
19 Hb_188247_020 0.0078517976 - - hypothetical protein, partial [Cecembia lonarensis]
20 Hb_000345_090 0.0079722447 - - Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]

Gene co-expression network

sample Hb_159542_010 Hb_159542_010 Hb_000696_180 Hb_000696_180 Hb_159542_010--Hb_000696_180 Hb_000938_010 Hb_000938_010 Hb_159542_010--Hb_000938_010 Hb_071079_030 Hb_071079_030 Hb_159542_010--Hb_071079_030 Hb_001031_070 Hb_001031_070 Hb_159542_010--Hb_001031_070 Hb_000441_240 Hb_000441_240 Hb_159542_010--Hb_000441_240 Hb_011444_050 Hb_011444_050 Hb_159542_010--Hb_011444_050 Hb_000696_180--Hb_011444_050 Hb_000329_240 Hb_000329_240 Hb_000696_180--Hb_000329_240 Hb_073174_010 Hb_073174_010 Hb_000696_180--Hb_073174_010 Hb_000696_180--Hb_000938_010 Hb_163720_010 Hb_163720_010 Hb_000696_180--Hb_163720_010 Hb_000938_010--Hb_071079_030 Hb_000938_010--Hb_001031_070 Hb_000938_010--Hb_000441_240 Hb_003687_050 Hb_003687_050 Hb_000938_010--Hb_003687_050 Hb_002596_100 Hb_002596_100 Hb_000938_010--Hb_002596_100 Hb_071079_030--Hb_001031_070 Hb_071079_030--Hb_000441_240 Hb_071079_030--Hb_003687_050 Hb_071079_030--Hb_002596_100 Hb_001031_100 Hb_001031_100 Hb_071079_030--Hb_001031_100 Hb_001031_070--Hb_000441_240 Hb_001031_070--Hb_003687_050 Hb_001031_070--Hb_002596_100 Hb_001031_070--Hb_001031_100 Hb_000441_240--Hb_003687_050 Hb_000441_240--Hb_002596_100 Hb_000441_240--Hb_001031_100 Hb_011444_050--Hb_000329_240 Hb_011444_050--Hb_073174_010 Hb_011444_050--Hb_163720_010 Hb_001900_040 Hb_001900_040 Hb_011444_050--Hb_001900_040 Hb_000518_010 Hb_000518_010 Hb_011444_050--Hb_000518_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0778936 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0736921 0

CAGE analysis