Hb_000138_010

Information

Type -
Description -
Location Contig138: 76229-78378
Sequence    

Annotation

kegg
ID rcu:RCOM_0504460
description hypothetical protein
nr
ID XP_002530723.1
description hypothetical protein RCOM_0504460 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SXK4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0504460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000138_010 0.0 - - hypothetical protein RCOM_0504460 [Ricinus communis]
2 Hb_001141_080 0.1170527897 - - PREDICTED: protein RDM1 [Jatropha curcas]
3 Hb_005147_110 0.1177750394 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
4 Hb_000282_150 0.1199266194 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
5 Hb_018663_020 0.1218858515 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
6 Hb_001341_030 0.1232178468 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
7 Hb_000500_290 0.1253793043 - - bromodomain-containing protein, putative [Ricinus communis]
8 Hb_010866_040 0.1254567155 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
9 Hb_004310_060 0.1292562681 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_005914_230 0.1314477561 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
11 Hb_160818_010 0.1327758672 - - -
12 Hb_001226_180 0.1345130792 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
13 Hb_004232_010 0.1346600529 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
14 Hb_001195_110 0.1359498116 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
15 Hb_001946_260 0.1367271025 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
16 Hb_011316_030 0.1370972752 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
17 Hb_001195_100 0.1376901511 - - PREDICTED: uncharacterized protein LOC105633812 [Jatropha curcas]
18 Hb_001140_080 0.1377469364 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
19 Hb_001408_090 0.1381319708 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
20 Hb_005754_020 0.1384820714 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]

Gene co-expression network

sample Hb_000138_010 Hb_000138_010 Hb_001141_080 Hb_001141_080 Hb_000138_010--Hb_001141_080 Hb_005147_110 Hb_005147_110 Hb_000138_010--Hb_005147_110 Hb_000282_150 Hb_000282_150 Hb_000138_010--Hb_000282_150 Hb_018663_020 Hb_018663_020 Hb_000138_010--Hb_018663_020 Hb_001341_030 Hb_001341_030 Hb_000138_010--Hb_001341_030 Hb_000500_290 Hb_000500_290 Hb_000138_010--Hb_000500_290 Hb_001141_080--Hb_005147_110 Hb_002249_140 Hb_002249_140 Hb_001141_080--Hb_002249_140 Hb_009382_020 Hb_009382_020 Hb_001141_080--Hb_009382_020 Hb_004310_060 Hb_004310_060 Hb_001141_080--Hb_004310_060 Hb_008725_250 Hb_008725_250 Hb_001141_080--Hb_008725_250 Hb_003428_110 Hb_003428_110 Hb_001141_080--Hb_003428_110 Hb_005147_110--Hb_008725_250 Hb_005147_110--Hb_004310_060 Hb_005147_110--Hb_001341_030 Hb_005914_230 Hb_005914_230 Hb_005147_110--Hb_005914_230 Hb_005147_110--Hb_018663_020 Hb_000373_270 Hb_000373_270 Hb_005147_110--Hb_000373_270 Hb_001140_080 Hb_001140_080 Hb_000282_150--Hb_001140_080 Hb_000282_150--Hb_000500_290 Hb_011537_040 Hb_011537_040 Hb_000282_150--Hb_011537_040 Hb_000270_450 Hb_000270_450 Hb_000282_150--Hb_000270_450 Hb_012807_120 Hb_012807_120 Hb_000282_150--Hb_012807_120 Hb_004232_010 Hb_004232_010 Hb_000282_150--Hb_004232_010 Hb_018663_020--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_018663_020--Hb_003384_030 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_001969_040 Hb_001969_040 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_001341_030--Hb_000373_270 Hb_001341_030--Hb_004310_060 Hb_001341_030--Hb_018663_020 Hb_001975_070 Hb_001975_070 Hb_001341_030--Hb_001975_070 Hb_001341_030--Hb_001969_040 Hb_005271_070 Hb_005271_070 Hb_000500_290--Hb_005271_070 Hb_001348_140 Hb_001348_140 Hb_000500_290--Hb_001348_140 Hb_000500_290--Hb_004232_010 Hb_009615_110 Hb_009615_110 Hb_000500_290--Hb_009615_110 Hb_000500_290--Hb_011537_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.4779 7.56782 4.9448 1.54298 21.6534 22.043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0559 3.91151 10.5439 7.35153 1.69007

CAGE analysis