Gene annotation
Transcriptome id Sobic.010G097600.1
Synonym Sb10g008510, WLIM1
Functional annotation OsLIM - LIM domain protein, putative actin-binding protein and transcription factor, expressed
UniProt Q9XE69 , C5Z7H7
Pfam PF00412
Panther DB PTHR24206 PTHR24206:SF23
NCBI CDD KOG1700; Regulatory protein MLP and related LIM proteins
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G10200 : GATA type zinc finger transcription factor family protein
RAP-DB (Rice) LOC_Os06g13030.1 : OsLIM - LIM domain protein, putative actin-binding protein and transcription factor, expressed
MaizeGDB (Corn) Zm00025a042633
Brachypodium KQK18806
Barley HORVU7Hr1G039480.4 , HORVU7Hr1G039480.7 , HORVU7Hr1G039480.6 , HORVU7Hr1G039480.1 , HORVU7Hr1G039480.3 , HORVU7Hr1G039480.9 , HORVU7Hr1G039480.8 , HORVU7Hr1G039480.20 , HORVU7Hr1G039480.21 , HORVU7Hr1G039480.11 , HORVU7Hr1G039480.10 , HORVU7Hr1G039480.13 , HORVU7Hr1G039480.12 , HORVU7Hr1G039480.15 , HORVU7Hr1G039480.14 , HORVU7Hr1G039480.17 , HORVU7Hr1G039480.16 , HORVU7Hr1G039480.19 , HORVU7Hr1G039480.18 , HORVU7Hr1G039480.5
Wheat TraesCS7B02G098800 , TraesCS7B02G098800 , TraesCS7B02G098800 , TraesCS7D02G194800 , TraesCS7A02G193500 , TraesCS7A02G193500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G048600 - -
2 Sobic.010G013800 START domain containing protein, expressed -
3 Sobic.008G188900 homeobox domain containing protein, expressed -
4 Sobic.008G151100 protein kinase domain containing protein, expressed -
5 Sobic.001G205200 expressed protein -
6 Sobic.004G341900 lecithine cholesterol acyltransferase, putative, expressed -
7 Sobic.001G486300 phosphatidylinositol transfer, putative, expressed -
8 Sobic.005G023900 expressed protein -
9 Sobic.005G045000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
10 Sobic.006G048500 - -
11 Sobic.003G332800 GTPase-activating protein, putative, expressed -
12 Sobic.003G176500 - -
13 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
14 Sobic.007G167500 expressed protein -
15 Sobic.004G007100 - -
16 Sobic.001G533700 STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.004G326200 expressed protein -
18 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.003G406300 - -
20 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''


Gene co-expression network
sample Sobic010G097600 Sobic010G097600 Sobic006G048600 Sobic006G048600 Sobic010G097600--Sobic006G048600 Sobic010G013800 Sobic010G013800 Sobic010G097600--Sobic010G013800 Sobic008G188900 Sobic008G188900 Sobic010G097600--Sobic008G188900 Sobic008G151100 Sobic008G151100 Sobic010G097600--Sobic008G151100 Sobic001G205200 Sobic001G205200 Sobic010G097600--Sobic001G205200 Sobic004G341900 Sobic004G341900 Sobic010G097600--Sobic004G341900 Sobic001G486300 Sobic001G486300 Sobic010G097600--Sobic001G486300 Sobic005G023900 Sobic005G023900 Sobic010G097600--Sobic005G023900 Sobic005G045000 Sobic005G045000 Sobic010G097600--Sobic005G045000 Sobic004G007100 Sobic004G007100 Sobic006G048600--Sobic004G007100 Sobic006G048500 Sobic006G048500 Sobic006G048600--Sobic006G048500 Sobic001G318432 Sobic001G318432 Sobic006G048600--Sobic001G318432 Sobic006G105400 Sobic006G105400 Sobic006G048600--Sobic006G105400 Sobic006G048600--Sobic004G341900 Sobic006G048600--Sobic001G205200 Sobic005G144400 Sobic005G144400 Sobic006G048600--Sobic005G144400 Sobic003G148000 Sobic003G148000 Sobic006G048600--Sobic003G148000 Sobic001G214300 Sobic001G214300 Sobic006G048600--Sobic001G214300 Sobic010G013800--Sobic004G341900 Sobic003G029700 Sobic003G029700 Sobic010G013800--Sobic003G029700 Sobic010G013800--Sobic008G188900 Sobic010G013800--Sobic001G318432 Sobic010G013800--Sobic001G214300 Sobic009G191000 Sobic009G191000 Sobic010G013800--Sobic009G191000 Sobic003G229300 Sobic003G229300 Sobic010G013800--Sobic003G229300 Sobic010G013800--Sobic006G048600 Sobic002G411600 Sobic002G411600 Sobic010G013800--Sobic002G411600 Sobic008G188900--Sobic010G013800 Sobic008G188900--Sobic004G341900 Sobic008G188900--Sobic003G029700 Sobic008G188900--Sobic001G214300 Sobic008G188900--Sobic005G144400 Sobic008G188900--Sobic006G048600 Sobic008G188900--Sobic006G048500 Sobic008G188900--Sobic004G007100 Sobic008G188900--Sobic010G097600 Sobic003G198800 Sobic003G198800 Sobic008G151100--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic008G151100--Sobic001G381600 Sobic001G212300 Sobic001G212300 Sobic008G151100--Sobic001G212300 Sobic003G191700 Sobic003G191700 Sobic008G151100--Sobic003G191700 Sobic009G238000 Sobic009G238000 Sobic008G151100--Sobic009G238000 Sobic008G151100--Sobic005G045000 Sobic008G151100--Sobic010G097600 Sobic008G151100--Sobic003G229300 Sobic007G198300 Sobic007G198300 Sobic008G151100--Sobic007G198300 Sobic001G205200--Sobic006G048500 Sobic002G006900 Sobic002G006900 Sobic001G205200--Sobic002G006900 Sobic003G372700 Sobic003G372700 Sobic001G205200--Sobic003G372700 Sobic002G297200 Sobic002G297200 Sobic001G205200--Sobic002G297200 Sobic001G205200--Sobic004G007100 Sobic002G309600 Sobic002G309600 Sobic001G205200--Sobic002G309600 Sobic003G087400 Sobic003G087400 Sobic001G205200--Sobic003G087400 Sobic007G167500 Sobic007G167500 Sobic001G205200--Sobic007G167500 Sobic001G205200--Sobic003G029700 Sobic004G341900--Sobic001G214300 Sobic004G341900--Sobic003G029700 Sobic004G341900--Sobic002G006900 Sobic004G341900--Sobic010G013800 Sobic003G176500 Sobic003G176500 Sobic004G341900--Sobic003G176500 Sobic004G341900--Sobic009G191000 Sobic009G026500 Sobic009G026500 Sobic004G341900--Sobic009G026500 Sobic004G341900--Sobic008G188900 Sobic004G341900--Sobic006G048600 Sobic001G486300--Sobic005G023900 Sobic001G420200 Sobic001G420200 Sobic001G486300--Sobic001G420200 Sobic003G268300 Sobic003G268300 Sobic001G486300--Sobic003G268300 Sobic007G011400 Sobic007G011400 Sobic001G486300--Sobic007G011400 Sobic001G497300 Sobic001G497300 Sobic001G486300--Sobic001G497300 Sobic004G290800 Sobic004G290800 Sobic001G486300--Sobic004G290800 Sobic001G107500 Sobic001G107500 Sobic001G486300--Sobic001G107500 Sobic001G251700 Sobic001G251700 Sobic001G486300--Sobic001G251700 Sobic003G220200 Sobic003G220200 Sobic001G486300--Sobic003G220200 Sobic002G157000 Sobic002G157000 Sobic005G023900--Sobic002G157000 Sobic003G200200 Sobic003G200200 Sobic005G023900--Sobic003G200200 Sobic001G413500 Sobic001G413500 Sobic005G023900--Sobic001G413500 Sobic005G023900--Sobic001G497300 Sobic005G023900--Sobic002G006900 Sobic005G023900--Sobic001G486300 Sobic005G023900--Sobic003G268300 Sobic007G065400 Sobic007G065400 Sobic005G023900--Sobic007G065400 Sobic009G210500 Sobic009G210500 Sobic005G023900--Sobic009G210500 Sobic003G313300 Sobic003G313300 Sobic005G045000--Sobic003G313300 Sobic001G305600 Sobic001G305600 Sobic005G045000--Sobic001G305600 Sobic001G468700 Sobic001G468700 Sobic005G045000--Sobic001G468700 Sobic003G017100 Sobic003G017100 Sobic005G045000--Sobic003G017100 Sobic004G028500 Sobic004G028500 Sobic005G045000--Sobic004G028500 Sobic005G045000--Sobic003G191700 Sobic004G347800 Sobic004G347800 Sobic005G045000--Sobic004G347800 Sobic005G045000--Sobic008G151100 Sobic008G168300 Sobic008G168300 Sobic005G045000--Sobic008G168300
Octagon: transcription factors


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