Gene annotation
Transcriptome id Sobic.003G332800.3,Sobic.003G332800.4,Sobic.003G332800.1,Sobic.003G332800.5
Synonym ZIGA4, AGD14, Sb03g037790
Functional annotation GTPase-activating protein, putative, expressed
UniProt C5XN60
Pfam PF01412
Panther DB PTHR23180 PTHR23180:SF202
NCBI CDD KOG0702; Predicted GTPase-activating protein
KEGG Orthology -
Gene Ontology GO:0005096; GTPase activator activity


Orthologs (automatic annotation)
TAIR AT1G08680 : ARF GAP-like zinc finger-containing protein ZIGA4
RAP-DB (Rice) LOC_Os01g59850.1 : GTPase-activating protein, putative, expressed
MaizeGDB (Corn) Zm00025a027116
Brachypodium KQK10272 , KQK10271 , PNT73075 , PNT73074 , PNT73077 , PNT73076
Barley HORVU3Hr1G079760.4 , HORVU3Hr1G079760.1 , HORVU3Hr1G079760.2 , HORVU3Hr1G079760.3 , HORVU3Hr1G079760.5
Wheat TraesCS3A02G337800 , TraesCS3A02G337800 , TraesCS3A02G337800 , TraesCS3D02G331200 , TraesCS3D02G331200 , TraesCS3B02G369400 , TraesCS3B02G369400 , TraesCS3B02G369400 , TraesCS3B02G369400
Populus -


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cDNA sequences
Sobic.003G332800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G096600 - -
2 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
3 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
4 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.007G167500 expressed protein -
6 Sobic.009G209300 starch synthase, putative, expressed -
7 Sobic.002G243900 - -
8 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
9 Sobic.003G176500 - -
10 Sobic.006G048500 - -
11 Sobic.010G277500 expressed protein -
12 Sobic.003G268300 surp module family protein, putative, expressed -
13 Sobic.003G372700 expressed protein -
14 Sobic.001G214300 expressed protein -
15 Sobic.003G429650 - -
16 Sobic.002G145101 - -
17 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
18 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
19 Sobic.005G110472 - -
20 Sobic.002G180666 - -


Gene co-expression network
sample Sobic003G332800 Sobic003G332800 Sobic007G096600 Sobic007G096600 Sobic003G332800--Sobic007G096600 Sobic006G216800 Sobic006G216800 Sobic003G332800--Sobic006G216800 Sobic003G148000 Sobic003G148000 Sobic003G332800--Sobic003G148000 Sobic002G006900 Sobic002G006900 Sobic003G332800--Sobic002G006900 Sobic007G167500 Sobic007G167500 Sobic003G332800--Sobic007G167500 Sobic009G209300 Sobic009G209300 Sobic003G332800--Sobic009G209300 Sobic002G243900 Sobic002G243900 Sobic003G332800--Sobic002G243900 Sobic007G065400 Sobic007G065400 Sobic003G332800--Sobic007G065400 Sobic003G176500 Sobic003G176500 Sobic003G332800--Sobic003G176500 Sobic007G096600--Sobic002G243900 Sobic003G268300 Sobic003G268300 Sobic007G096600--Sobic003G268300 Sobic007G096600--Sobic003G176500 Sobic001G274200 Sobic001G274200 Sobic007G096600--Sobic001G274200 Sobic003G200200 Sobic003G200200 Sobic007G096600--Sobic003G200200 Sobic005G144400 Sobic005G144400 Sobic007G096600--Sobic005G144400 Sobic007G096600--Sobic003G148000 Sobic007G096600--Sobic003G332800 Sobic001G420200 Sobic001G420200 Sobic007G096600--Sobic001G420200 Sobic002G133400 Sobic002G133400 Sobic006G216800--Sobic002G133400 Sobic007G116200 Sobic007G116200 Sobic006G216800--Sobic007G116200 Sobic002G309600 Sobic002G309600 Sobic006G216800--Sobic002G309600 Sobic002G134200 Sobic002G134200 Sobic006G216800--Sobic002G134200 Sobic006G216800--Sobic003G332800 Sobic005G112300 Sobic005G112300 Sobic006G216800--Sobic005G112300 Sobic003G280800 Sobic003G280800 Sobic006G216800--Sobic003G280800 Sobic010G139000 Sobic010G139000 Sobic006G216800--Sobic010G139000 Sobic010G277500 Sobic010G277500 Sobic006G216800--Sobic010G277500 Sobic003G148000--Sobic005G144400 Sobic002G180666 Sobic002G180666 Sobic003G148000--Sobic002G180666 Sobic002G145101 Sobic002G145101 Sobic003G148000--Sobic002G145101 Sobic006G048500 Sobic006G048500 Sobic003G148000--Sobic006G048500 Sobic003G148000--Sobic002G243900 Sobic001G214300 Sobic001G214300 Sobic003G148000--Sobic001G214300 Sobic003G148000--Sobic007G096600 Sobic003G429650 Sobic003G429650 Sobic003G148000--Sobic003G429650 Sobic004G258700 Sobic004G258700 Sobic003G148000--Sobic004G258700 Sobic008G047800 Sobic008G047800 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic009G040600 Sobic009G040600 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic003G119000 Sobic003G119000 Sobic007G167500--Sobic003G119000 Sobic007G167500--Sobic002G006900 Sobic003G397800 Sobic003G397800 Sobic007G167500--Sobic003G397800 Sobic007G167500--Sobic007G096600 Sobic010G101800 Sobic010G101800 Sobic007G167500--Sobic010G101800 Sobic007G167500--Sobic007G065400 Sobic009G210500 Sobic009G210500 Sobic007G167500--Sobic009G210500 Sobic007G167500--Sobic003G332800 Sobic007G167500--Sobic003G372700 Sobic009G209300--Sobic003G332800 Sobic009G209300--Sobic006G216800 Sobic009G209300--Sobic003G429650 Sobic006G182900 Sobic006G182900 Sobic009G209300--Sobic006G182900 Sobic009G209300--Sobic006G048500 Sobic009G209300--Sobic007G116200 Sobic002G006600 Sobic002G006600 Sobic009G209300--Sobic002G006600 Sobic009G209300--Sobic003G148000 Sobic001G036050 Sobic001G036050 Sobic009G209300--Sobic001G036050 Sobic002G243900--Sobic007G096600 Sobic004G007100 Sobic004G007100 Sobic002G243900--Sobic004G007100 Sobic002G243900--Sobic005G144400 Sobic002G243900--Sobic003G148000 Sobic002G243900--Sobic006G048500 Sobic007G178700 Sobic007G178700 Sobic002G243900--Sobic007G178700 Sobic002G243900--Sobic003G268300 Sobic002G243900--Sobic002G145101 Sobic002G243900--Sobic003G176500 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic007G065400--Sobic009G210500 Sobic007G065400--Sobic003G119000 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic003G176500--Sobic007G096600 Sobic003G176500--Sobic002G243900 Sobic003G176500--Sobic002G006900 Sobic003G176500--Sobic005G144400 Sobic003G176500--Sobic001G214300 Sobic003G176500--Sobic003G200200 Sobic003G176500--Sobic007G178700 Sobic003G176500--Sobic003G148000 Sobic003G176500--Sobic003G268300
Octagon: transcription factors


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