Gene annotation
Transcriptome id Sobic.003G268300.1,Sobic.003G268300.2
Synonym Sb03g032080
Functional annotation surp module family protein, putative, expressed
UniProt C5XHJ0 , A0A1W0VZ27
Pfam PF09750 PF01805 PF01805
Panther DB PTHR13161 PTHR13161:SF15
NCBI CDD KOG1847; mRNA splicing factor
KEGG Orthology -
Gene Ontology GO:0006396; RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G55100 : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
RAP-DB (Rice) LOC_Os01g50320.1 : surp module family protein, putative, expressed
MaizeGDB (Corn) Zm00025a038898
Brachypodium KQK09342
Barley HORVU3Hr1G065510.5 , HORVU3Hr1G065510.7 , HORVU3Hr1G065510.4 , HORVU3Hr1G065510.3 , HORVU3Hr1G065510.1 , HORVU3Hr1G065510.8 , HORVU3Hr1G065510.9 , HORVU3Hr1G065510.19 , HORVU3Hr1G065510.14 , HORVU3Hr1G065510.15 , HORVU3Hr1G065510.16 , HORVU3Hr1G065510.17 , HORVU3Hr1G065510.10 , HORVU3Hr1G065510.11 , HORVU3Hr1G065510.12 , HORVU3Hr1G065510.13 , HORVU3Hr1G065510.21
Wheat TraesCS3B02G289900 , TraesCS3A02G256900 , TraesCS3D02G257000
Populus -


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cDNA sequences
Sobic.003G268300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G096600 - -
2 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
3 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
4 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
5 Sobic.002G248400 ENT domain containing protein, expressed -
6 Sobic.009G127900 - -
7 Sobic.007G178700 - -
8 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
9 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
10 Sobic.003G422300 recA protein, expressed K03553: recombination protein RecA
11 Sobic.003G170100 - -
12 Sobic.001G094000 expressed protein -
13 Sobic.006G080300 SET domain containing protein, expressed -
14 Sobic.001G162300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
15 Sobic.002G243900 - -
16 Sobic.006G246900 expressed protein -
17 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
18 Sobic.002G144933 - -
19 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.005G110472 - -


Gene co-expression network
sample Sobic003G268300 Sobic003G268300 Sobic007G096600 Sobic007G096600 Sobic003G268300--Sobic007G096600 Sobic002G157000 Sobic002G157000 Sobic003G268300--Sobic002G157000 Sobic001G420200 Sobic001G420200 Sobic003G268300--Sobic001G420200 Sobic003G200200 Sobic003G200200 Sobic003G268300--Sobic003G200200 Sobic002G248400 Sobic002G248400 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic007G178700 Sobic007G178700 Sobic003G268300--Sobic007G178700 Sobic007G037900 Sobic007G037900 Sobic003G268300--Sobic007G037900 Sobic008G173900 Sobic008G173900 Sobic003G268300--Sobic008G173900 Sobic002G243900 Sobic002G243900 Sobic007G096600--Sobic002G243900 Sobic007G096600--Sobic003G268300 Sobic003G176500 Sobic003G176500 Sobic007G096600--Sobic003G176500 Sobic001G274200 Sobic001G274200 Sobic007G096600--Sobic001G274200 Sobic007G096600--Sobic003G200200 Sobic005G144400 Sobic005G144400 Sobic007G096600--Sobic005G144400 Sobic003G148000 Sobic003G148000 Sobic007G096600--Sobic003G148000 Sobic003G332800 Sobic003G332800 Sobic007G096600--Sobic003G332800 Sobic007G096600--Sobic001G420200 Sobic002G157000--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic001G094000 Sobic001G094000 Sobic002G157000--Sobic001G094000 Sobic001G420200--Sobic001G274200 Sobic001G420200--Sobic002G157000 Sobic001G420200--Sobic003G268300 Sobic001G420200--Sobic008G173900 Sobic001G420200--Sobic002G248400 Sobic001G420200--Sobic007G096600 Sobic001G420200--Sobic007G037900 Sobic002G144933 Sobic002G144933 Sobic001G420200--Sobic002G144933 Sobic001G420200--Sobic007G178700 Sobic003G200200--Sobic002G157000 Sobic002G006900 Sobic002G006900 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic003G200200--Sobic007G096600 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic003G200200--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic003G200200--Sobic003G170100 Sobic002G248400--Sobic002G157000 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic002G248400--Sobic003G200200 Sobic006G032400 Sobic006G032400 Sobic002G248400--Sobic006G032400 Sobic001G090400 Sobic001G090400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400 Sobic009G127900--Sobic007G178700 Sobic009G127900--Sobic003G268300 Sobic001G446900 Sobic001G446900 Sobic009G127900--Sobic001G446900 Sobic006G066650 Sobic006G066650 Sobic009G127900--Sobic006G066650 Sobic004G290800 Sobic004G290800 Sobic009G127900--Sobic004G290800 Sobic010G026400 Sobic010G026400 Sobic009G127900--Sobic010G026400 Sobic009G127900--Sobic007G037900 Sobic009G127900--Sobic008G173900 Sobic001G111900 Sobic001G111900 Sobic009G127900--Sobic001G111900 Sobic007G178700--Sobic009G127900 Sobic007G178700--Sobic003G268300 Sobic007G178700--Sobic002G243900 Sobic003G087400 Sobic003G087400 Sobic007G178700--Sobic003G087400 Sobic004G007100 Sobic004G007100 Sobic007G178700--Sobic004G007100 Sobic007G178700--Sobic001G162300 Sobic007G178700--Sobic001G446900 Sobic007G178700--Sobic005G144400 Sobic007G178700--Sobic001G420200 Sobic007G037900--Sobic003G268300 Sobic007G037900--Sobic001G420200 Sobic006G246900 Sobic006G246900 Sobic007G037900--Sobic006G246900 Sobic007G037900--Sobic002G144933 Sobic007G037900--Sobic001G274200 Sobic007G037900--Sobic009G127900 Sobic007G037900--Sobic001G162300 Sobic007G037900--Sobic004G290800 Sobic007G037900--Sobic002G157000 Sobic008G173900--Sobic002G157000 Sobic008G173900--Sobic002G144933 Sobic008G173900--Sobic001G420200 Sobic008G173900--Sobic003G268300 Sobic008G054500 Sobic008G054500 Sobic008G173900--Sobic008G054500 Sobic008G173900--Sobic003G200200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic008G173900--Sobic007G096600
Octagon: transcription factors


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