Gene annotation
Transcriptome id Sobic.010G022400.1
Synonym EMB2301, NST1, ANAC043, Sb10g002120
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
no apical meristem protein, putative, expressed
UniProt Q5NKS7
Pfam PF02365
Panther DB PTHR31989 PTHR31989:SF38
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G46770 : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
RAP-DB (Rice) LOC_Os06g04090.1 : no apical meristem protein, putative, expressed
MaizeGDB (Corn) Zm00025a042359 , Zm00025a049186 , Zm00025a030255 , Zm00025a040616 , Zm00025a032018 , Zm00025a056131 , Zm00025a032141 , Zm00025a041401 , Zm00025a020964 , Zm00025a050329 , Zm00025a000360 , Zm00025a050155 , Zm00025a010429 , Zm00025a040250 , Zm00025a040128 , Zm00025a050926 , Zm00025a018537 , Zm00025a011264
Brachypodium KQJ94778 , KQJ94869 , KQK00527 , KQK14591 , KQJ94263 , KQJ94262 , PNT61568 , KQK19730 , KQK10957 , KQK20318 , KQK06182 , KQK10307 , KQK15684 , KQK15686 , PNT78278 , KQK15688 , PNT71229 , KQK18101 , KQK18102 , PNT76724 , KQK16671 , KQK06213 , KQK20059 , KQK23798 , KQJ83800 , KQJ82828 , PNT76596 , PNT66495 , KQK23882 , KQJ83799 , KQJ83798
Barley HORVU2Hr1G017470.1 , HORVU2Hr1G017470.3 , HORVU2Hr1G017470.2 , HORVU2Hr1G017470.4 , HORVU2Hr1G017470.7 , HORVU2Hr1G017470.9 , HORVU2Hr1G017470.8 , HORVU7Hr1G000140.8 , HORVU7Hr1G000140.9 , HORVU7Hr1G000140.4 , HORVU7Hr1G000140.5 , HORVU7Hr1G000140.6 , HORVU7Hr1G000140.7 , HORVU7Hr1G075550.3 , HORVU7Hr1G075550.2 , HORVU7Hr1G075550.1 , HORVU7Hr1G075550.7 , HORVU7Hr1G075550.6 , HORVU7Hr1G075550.5 , HORVU7Hr1G075550.4 , HORVU3Hr1G090440.4 , HORVU3Hr1G090440.5 , HORVU3Hr1G090440.6 , HORVU3Hr1G090440.7 , HORVU3Hr1G090440.1 , HORVU3Hr1G090440.2 , HORVU3Hr1G090440.8 , HORVU3Hr1G090440.9 , HORVU2Hr1G017370.6 , HORVU6Hr1G015950.1 , HORVU2Hr1G017370.4 , HORVU2Hr1G017370.5 , HORVU2Hr1G017370.2 , HORVU2Hr1G017370.3 , HORVU2Hr1G017370.1 , HORVU3Hr1G094170.1 , HORVU2Hr1G017350.8 , HORVU2Hr1G017350.9 , HORVU2Hr1G017350.1 , HORVU2Hr1G017350.2 , HORVU2Hr1G017350.3 , HORVU2Hr1G017350.4 , HORVU2Hr1G017350.5 , HORVU2Hr1G017350.6 , HORVU2Hr1G017350.7 , HORVU6Hr1G060800.2 , HORVU6Hr1G060800.3 , HORVU6Hr1G060800.1 , HORVU6Hr1G060800.6 , HORVU6Hr1G060800.7 , HORVU6Hr1G060800.4 , HORVU6Hr1G060800.5 , HORVU7Hr1G012760.10 , HORVU1Hr1G064300.2 , HORVU1Hr1G064300.1 , HORVU1Hr1G064300.4 , HORVU1Hr1G064300.5 , HORVU2Hr1G017360.1 , HORVU7Hr1G012730.2 , HORVU7Hr1G012730.3 , HORVU7Hr1G012730.4 , HORVU7Hr1G012730.7 , HORVU7Hr1G012730.8 , HORVU7Hr1G012730.9 , HORVU7Hr1G079500.1 , HORVU7Hr1G012740.1 , HORVU7Hr1G079500.2 , HORVU7Hr1G079500.3 , HORVU2Hr1G017400.1 , HORVU2Hr1G017400.2 , HORVU2Hr1G017400.3 , HORVU2Hr1G017400.4 , HORVU2Hr1G017400.5 , HORVU2Hr1G017400.6 , HORVU2Hr1G017400.7 , HORVU4Hr1G083050.2 , HORVU4Hr1G083050.3 , HORVU4Hr1G083050.4 , HORVU4Hr1G083050.5 , HORVU4Hr1G083050.6 , HORVU4Hr1G083050.7 , HORVU4Hr1G083050.8 , HORVU4Hr1G083050.9 , HORVU2Hr1G017460.10 , HORVU4Hr1G083050.10 , HORVU4Hr1G083050.11 , HORVU4Hr1G083050.15 , HORVU7Hr1G012760.3 , HORVU7Hr1G012760.2 , HORVU7Hr1G012760.1 , HORVU7Hr1G012760.7 , HORVU7Hr1G012760.6 , HORVU7Hr1G012760.5 , HORVU7Hr1G012760.4 , HORVU7Hr1G012760.9 , HORVU7Hr1G012760.8 , HORVU0Hr1G028970.1 , HORVU2Hr1G017360.2 , HORVU7Hr1G012780.7 , HORVU7Hr1G000140.12 , HORVU7Hr1G000140.13 , HORVU7Hr1G000140.10 , HORVU7Hr1G000140.11 , HORVU0Hr1G026330.5 , HORVU0Hr1G026330.1 , HORVU0Hr1G026330.2 , HORVU2Hr1G004130.1 , HORVU2Hr1G017470.15 , HORVU2Hr1G017470.14 , HORVU2Hr1G017470.11 , HORVU2Hr1G017470.10 , HORVU2Hr1G017470.13 , HORVU2Hr1G017470.12 , HORVU7Hr1G079500.4 , HORVU7Hr1G012780.9 , HORVU7Hr1G012780.8 , HORVU7Hr1G012780.5 , HORVU7Hr1G012780.4 , HORVU7Hr1G012780.6 , HORVU7Hr1G012780.1 , HORVU7Hr1G012780.3 , HORVU7Hr1G012780.2 , HORVU2Hr1G017370.7 , HORVU3Hr1G090440.10 , HORVU6Hr1G060800.8 , HORVU6Hr1G060800.9 , HORVU5Hr1G045650.8 , HORVU5Hr1G045650.4 , HORVU5Hr1G045650.7 , HORVU5Hr1G045650.1 , HORVU5Hr1G045650.3 , HORVU4Hr1G083050.12 , HORVU4Hr1G083050.13 , HORVU4Hr1G083050.14 , HORVU2Hr1G017460.8 , HORVU2Hr1G017460.9 , HORVU2Hr1G017460.2 , HORVU2Hr1G017460.6 , HORVU2Hr1G017460.7 , HORVU2Hr1G017460.4 , HORVU2Hr1G017460.5 , HORVU4Hr1G089660.1
Wheat TraesCS4A02G421300 , TraesCS2B02G328300 , TraesCS7D02G062100 , TraesCS1D02G263800 , TraesCS7D02G063300 , TraesCS2A02G311500 , TraesCS1A02G261800 , TraesCS5A02G143200 , TraesCS4A02G421200 , TraesCS6A02G237900 , TraesCS7A02G068300 , TraesCS2D02G100600 , TraesCS3B02G436900 , TraesCS7A02G317100 , TraesCS7A02G317100 , TraesCS2B02G118300 , TraesCS2D02G100700 , TraesCS2D02G100700 , TraesCS2D02G100800 , TraesCS4A02G419900 , TraesCS4A02G420200 , TraesCS5D02G148800 , TraesCS7D02G008500 , TraesCS2A02G101900 , TraesCS2B02G119100 , TraesCS5A02G491700 , TraesCS2A02G101000 , TraesCS2A02G101000 , TraesCS7D02G062600 , TraesCS2D02G101400 , TraesCS2B02G118500 , TraesCS4B02G320300 , TraesCS7D02G314000 , TraesCS7D02G314000 , TraesCS6D02G220600 , TraesCS4A02G421100 , TraesCS4A02G420900 , TraesCS2A02G102000 , TraesCS3A02G403300 , TraesCS2B02G118200 , TraesCS1D02G261800 , TraesCS4D02G316800 , TraesCS1B02G272600 , TraesCS2D02G309800 , TraesCS7B02G233300 , TraesCS7A02G008800 , TraesCS4A02G420000 , TraesCS7D02G329200 , TraesCS2B02G118400 , TraesCS2A02G101200 , TraesCS7A02G068200 , TraesCS7A02G349500 , TraesCS7D02G062400 , TraesCS3D02G398200 , TraesCS1A02G263700 , TraesCS7D02G062300 , TraesCS4A02G421000 , TraesCS4A02G420100 , TraesCS6B02G286200 , TraesCS6B02G286200 , TraesCS7A02G068000 , TraesCS4A02G486200 , TraesCS5B02G142100
Populus -


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cDNA sequences
Sobic.010G022400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G406700 expressed protein -
2 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
3 Sobic.001G336700 "Involved in secondary cell wall formation. Reduced mechanical strength in culms and leaves, thinner cell walls, reduced cellulose content, increased lignin content, in the mutant. The highest gene expression level in culms. The highest expression levels in vascular bundles and in sub-epidermal regions, where developing sclerenchyma cells are located."(PubMedID : 30590744)@COBRA-like protein precursor, putative, expressed -
4 Sobic.010G180100 transferase family protein, putative, expressed -
5 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
6 Sobic.009G170500 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
7 Sobic.002G167600 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
8 Sobic.005G107500 peptide transporter PTR2, putative, expressed -
9 Sobic.002G254900 membrane protein, putative, expressed -
10 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
11 Sobic.009G026101 - -
12 Sobic.003G198500 XIK, putative, expressed K10357: myosin V
13 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
14 Sobic.008G097500 expressed protein -
15 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
16 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
17 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
18 Sobic.010G131400 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor
19 Sobic.003G270400 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2


Gene co-expression network
sample Sobic010G022400 Sobic010G022400 Sobic001G406700 Sobic001G406700 Sobic010G022400--Sobic001G406700 Sobic003G387500 Sobic003G387500 Sobic010G022400--Sobic003G387500 Sobic001G336700 Sobic001G336700 Sobic010G022400--Sobic001G336700 Sobic010G180100 Sobic010G180100 Sobic010G022400--Sobic010G180100 Sobic009G226900 Sobic009G226900 Sobic010G022400--Sobic009G226900 Sobic009G170500 Sobic009G170500 Sobic010G022400--Sobic009G170500 Sobic002G167600 Sobic002G167600 Sobic010G022400--Sobic002G167600 Sobic005G107500 Sobic005G107500 Sobic010G022400--Sobic005G107500 Sobic002G254900 Sobic002G254900 Sobic010G022400--Sobic002G254900 Sobic001G406700--Sobic003G387500 Sobic006G144600 Sobic006G144600 Sobic001G406700--Sobic006G144600 Sobic001G399200 Sobic001G399200 Sobic001G406700--Sobic001G399200 Sobic001G406700--Sobic009G170500 Sobic010G232500 Sobic010G232500 Sobic001G406700--Sobic010G232500 Sobic001G406700--Sobic002G167600 Sobic005G229100 Sobic005G229100 Sobic001G406700--Sobic005G229100 Sobic007G119500 Sobic007G119500 Sobic001G406700--Sobic007G119500 Sobic009G246700 Sobic009G246700 Sobic001G406700--Sobic009G246700 Sobic003G387500--Sobic001G406700 Sobic003G387500--Sobic006G144600 Sobic001G224300 Sobic001G224300 Sobic003G387500--Sobic001G224300 Sobic003G387500--Sobic010G232500 Sobic003G387500--Sobic002G167600 Sobic003G387500--Sobic009G170500 Sobic009G162700 Sobic009G162700 Sobic003G387500--Sobic009G162700 Sobic002G205500 Sobic002G205500 Sobic003G387500--Sobic002G205500 Sobic003G387500--Sobic009G226900 Sobic002G082300 Sobic002G082300 Sobic001G336700--Sobic002G082300 Sobic001G336700--Sobic010G022400 Sobic001G336700--Sobic009G226900 Sobic001G336700--Sobic002G205500 Sobic006G226200 Sobic006G226200 Sobic001G336700--Sobic006G226200 Sobic001G336700--Sobic003G387500 Sobic009G048000 Sobic009G048000 Sobic001G336700--Sobic009G048000 Sobic005G087200 Sobic005G087200 Sobic001G336700--Sobic005G087200 Sobic003G296400 Sobic003G296400 Sobic001G336700--Sobic003G296400 Sobic010G131400 Sobic010G131400 Sobic010G180100--Sobic010G131400 Sobic010G180100--Sobic002G254900 Sobic010G180100--Sobic002G167600 Sobic001G360700 Sobic001G360700 Sobic010G180100--Sobic001G360700 Sobic001G002800 Sobic001G002800 Sobic010G180100--Sobic001G002800 Sobic010G180100--Sobic001G224300 Sobic001G409100 Sobic001G409100 Sobic010G180100--Sobic001G409100 Sobic004G047600 Sobic004G047600 Sobic010G180100--Sobic004G047600 Sobic010G180100--Sobic003G387500 Sobic003G062000 Sobic003G062000 Sobic009G226900--Sobic003G062000 Sobic009G226900--Sobic001G224300 Sobic009G226900--Sobic003G296400 Sobic009G226900--Sobic002G205500 Sobic009G226900--Sobic003G387500 Sobic006G036400 Sobic006G036400 Sobic009G226900--Sobic006G036400 Sobic009G226900--Sobic001G406700 Sobic009G226900--Sobic005G087200 Sobic006G075000 Sobic006G075000 Sobic009G226900--Sobic006G075000 Sobic009G170500--Sobic001G406700 Sobic009G170500--Sobic002G167600 Sobic009G170500--Sobic007G119500 Sobic009G170500--Sobic006G144600 Sobic009G170500--Sobic003G387500 Sobic006G180300 Sobic006G180300 Sobic009G170500--Sobic006G180300 Sobic009G170500--Sobic004G047600 Sobic008G014700 Sobic008G014700 Sobic009G170500--Sobic008G014700 Sobic009G170500--Sobic010G232500 Sobic002G167600--Sobic001G360700 Sobic002G167600--Sobic006G144600 Sobic002G167600--Sobic004G047600 Sobic002G167600--Sobic001G406700 Sobic002G203900 Sobic002G203900 Sobic002G167600--Sobic002G203900 Sobic002G167600--Sobic009G170500 Sobic002G167600--Sobic002G254900 Sobic001G072600 Sobic001G072600 Sobic002G167600--Sobic001G072600 Sobic002G167600--Sobic010G180100 Sobic005G107500--Sobic001G002800 Sobic006G117500 Sobic006G117500 Sobic005G107500--Sobic006G117500 Sobic005G107500--Sobic002G254900 Sobic008G133000 Sobic008G133000 Sobic005G107500--Sobic008G133000 Sobic003G287200 Sobic003G287200 Sobic005G107500--Sobic003G287200 Sobic005G089200 Sobic005G089200 Sobic005G107500--Sobic005G089200 Sobic005G104200 Sobic005G104200 Sobic005G107500--Sobic005G104200 Sobic001G503000 Sobic001G503000 Sobic005G107500--Sobic001G503000 Sobic010G096700 Sobic010G096700 Sobic005G107500--Sobic010G096700 Sobic002G254900--Sobic001G002800 Sobic002G254900--Sobic010G096700 Sobic002G254900--Sobic010G180100 Sobic002G254900--Sobic004G047600 Sobic002G254900--Sobic001G360700 Sobic002G254900--Sobic001G503000 Sobic001G506600 Sobic001G506600 Sobic002G254900--Sobic001G506600 Sobic007G090472 Sobic007G090472 Sobic002G254900--Sobic007G090472 Sobic002G254900--Sobic002G167600
Octagon: transcription factors


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