Gene annotation
Transcriptome id Sobic.003G270400.3,Sobic.003G270400.4
Synonym Sb03g032270
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1W0VZ34 , A0A1W0VZ47
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF83
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G26580 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g50750.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027884
Brachypodium KQK09373 , PNT72671
Barley HORVU3Hr1G065900.2 , HORVU3Hr1G065900.5 , HORVU3Hr1G065900.9 , HORVU3Hr1G065900.8 , HORVU3Hr1G065900.1 , HORVU3Hr1G065900.3 , HORVU3Hr1G065900.4 , HORVU3Hr1G065900.7 , HORVU3Hr1G065900.6
Wheat TraesCS3B02G286400 , TraesCS3B02G286400 , TraesCS3A02G254400 , TraesCS3D02G255300 , TraesCS3D02G255300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G402400 expressed protein -
2 Sobic.007G119500 expressed protein -
3 Sobic.003G366300 protein kinase domain containing protein, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
4 Sobic.007G091900 ATP binding protein, putative, expressed -
5 Sobic.005G112000 P21-Rho-binding domain containing protein, putative, expressed -
6 Sobic.001G406700 expressed protein -
7 Sobic.004G047600 plant-specific domain TIGR01627 family protein, expressed -
8 Sobic.008G014700 domain of unknown function, DUF250 domain containing protein, expressed -
9 Sobic.003G378800 amino acid transporter, putative, expressed -
10 Sobic.002G376100 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
11 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
12 Sobic.002G275500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.005G110600 glycosyl hydrolase, putative, expressed K01183: chitinase
14 Sobic.003G255600 expressed protein -
15 Sobic.005G057000 Leucine Rich Repeat family protein, expressed -
16 Sobic.001G388000 GTPase-activating protein, putative, expressed -
17 Sobic.009G170500 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
18 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
19 Sobic.010G007000 Leucine Rich Repeat family protein, expressed -
20 Sobic.010G133932 - -


Gene co-expression network
sample Sobic003G270400 Sobic003G270400 Sobic001G402400 Sobic001G402400 Sobic003G270400--Sobic001G402400 Sobic007G119500 Sobic007G119500 Sobic003G270400--Sobic007G119500 Sobic003G366300 Sobic003G366300 Sobic003G270400--Sobic003G366300 Sobic007G091900 Sobic007G091900 Sobic003G270400--Sobic007G091900 Sobic005G112000 Sobic005G112000 Sobic003G270400--Sobic005G112000 Sobic001G406700 Sobic001G406700 Sobic003G270400--Sobic001G406700 Sobic004G047600 Sobic004G047600 Sobic003G270400--Sobic004G047600 Sobic008G014700 Sobic008G014700 Sobic003G270400--Sobic008G014700 Sobic003G378800 Sobic003G378800 Sobic003G270400--Sobic003G378800 Sobic001G402400--Sobic003G270400 Sobic003G052100 Sobic003G052100 Sobic001G402400--Sobic003G052100 Sobic002G275500 Sobic002G275500 Sobic001G402400--Sobic002G275500 Sobic003G296500 Sobic003G296500 Sobic001G402400--Sobic003G296500 Sobic010G220300 Sobic010G220300 Sobic001G402400--Sobic010G220300 Sobic001G402400--Sobic008G014700 Sobic005G057000 Sobic005G057000 Sobic001G402400--Sobic005G057000 Sobic002G376100 Sobic002G376100 Sobic001G402400--Sobic002G376100 Sobic006G009500 Sobic006G009500 Sobic001G402400--Sobic006G009500 Sobic009G170500 Sobic009G170500 Sobic007G119500--Sobic009G170500 Sobic007G119500--Sobic003G270400 Sobic007G119500--Sobic004G047600 Sobic001G072600 Sobic001G072600 Sobic007G119500--Sobic001G072600 Sobic002G167600 Sobic002G167600 Sobic007G119500--Sobic002G167600 Sobic007G119500--Sobic003G378800 Sobic001G360700 Sobic001G360700 Sobic007G119500--Sobic001G360700 Sobic006G144600 Sobic006G144600 Sobic007G119500--Sobic006G144600 Sobic007G119500--Sobic001G406700 Sobic003G366300--Sobic003G270400 Sobic003G366300--Sobic005G112000 Sobic001G388000 Sobic001G388000 Sobic003G366300--Sobic001G388000 Sobic003G366300--Sobic007G091900 Sobic003G366300--Sobic007G119500 Sobic005G110600 Sobic005G110600 Sobic003G366300--Sobic005G110600 Sobic003G099166 Sobic003G099166 Sobic003G366300--Sobic003G099166 Sobic004G163600 Sobic004G163600 Sobic003G366300--Sobic004G163600 Sobic003G198500 Sobic003G198500 Sobic003G366300--Sobic003G198500 Sobic001G302300 Sobic001G302300 Sobic007G091900--Sobic001G302300 Sobic007G091900--Sobic003G270400 Sobic007G091900--Sobic007G119500 Sobic007G091900--Sobic003G366300 Sobic007G091900--Sobic001G406700 Sobic007G091900--Sobic004G047600 Sobic003G387500 Sobic003G387500 Sobic007G091900--Sobic003G387500 Sobic004G319600 Sobic004G319600 Sobic007G091900--Sobic004G319600 Sobic007G091900--Sobic003G378800 Sobic003G371400 Sobic003G371400 Sobic005G112000--Sobic003G371400 Sobic003G082700 Sobic003G082700 Sobic005G112000--Sobic003G082700 Sobic005G112000--Sobic001G388000 Sobic010G133932 Sobic010G133932 Sobic005G112000--Sobic010G133932 Sobic005G112000--Sobic003G270400 Sobic005G112000--Sobic003G366300 Sobic001G208600 Sobic001G208600 Sobic005G112000--Sobic001G208600 Sobic010G007000 Sobic010G007000 Sobic005G112000--Sobic010G007000 Sobic006G160900 Sobic006G160900 Sobic005G112000--Sobic006G160900 Sobic001G406700--Sobic003G387500 Sobic001G406700--Sobic006G144600 Sobic001G399200 Sobic001G399200 Sobic001G406700--Sobic001G399200 Sobic001G406700--Sobic009G170500 Sobic010G232500 Sobic010G232500 Sobic001G406700--Sobic010G232500 Sobic001G406700--Sobic002G167600 Sobic005G229100 Sobic005G229100 Sobic001G406700--Sobic005G229100 Sobic001G406700--Sobic007G119500 Sobic009G246700 Sobic009G246700 Sobic001G406700--Sobic009G246700 Sobic004G047600--Sobic001G360700 Sobic003G352700 Sobic003G352700 Sobic004G047600--Sobic003G352700 Sobic007G047300 Sobic007G047300 Sobic004G047600--Sobic007G047300 Sobic001G471800 Sobic001G471800 Sobic004G047600--Sobic001G471800 Sobic002G146000 Sobic002G146000 Sobic004G047600--Sobic002G146000 Sobic004G047600--Sobic002G167600 Sobic002G254900 Sobic002G254900 Sobic004G047600--Sobic002G254900 Sobic002G203900 Sobic002G203900 Sobic004G047600--Sobic002G203900 Sobic009G162300 Sobic009G162300 Sobic004G047600--Sobic009G162300 Sobic010G242800 Sobic010G242800 Sobic008G014700--Sobic010G242800 Sobic002G029500 Sobic002G029500 Sobic008G014700--Sobic002G029500 Sobic005G110511 Sobic005G110511 Sobic008G014700--Sobic005G110511 Sobic007G064900 Sobic007G064900 Sobic008G014700--Sobic007G064900 Sobic001G293100 Sobic001G293100 Sobic008G014700--Sobic001G293100 Sobic005G182900 Sobic005G182900 Sobic008G014700--Sobic005G182900 Sobic005G097900 Sobic005G097900 Sobic008G014700--Sobic005G097900 Sobic008G033100 Sobic008G033100 Sobic008G014700--Sobic008G033100 Sobic007G015000 Sobic007G015000 Sobic008G014700--Sobic007G015000 Sobic003G378800--Sobic007G119500 Sobic008G055800 Sobic008G055800 Sobic003G378800--Sobic008G055800 Sobic003G378800--Sobic003G371400 Sobic003G378800--Sobic003G270400 Sobic003G378800--Sobic007G091900 Sobic003G378800--Sobic004G047600 Sobic003G378800--Sobic001G072600 Sobic003G378800--Sobic007G047300 Sobic009G221900 Sobic009G221900 Sobic003G378800--Sobic009G221900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.