Gene annotation
Transcriptome id Sobic.009G149400.1
Synonym ATAAT, Sb09g021360, AAT, MEE17
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
aminotransferase, classes I and II, domain containing protein, expressed
UniProt C5YYD7
Pfam PF00155
Panther DB PTHR11751 PTHR11751:SF379
NCBI CDD KOG0257; Kynurenine aminotransferase, glutamine transaminase K
KEGG Orthology K15849; PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G22250 : aspartate aminotransferase
RAP-DB (Rice) LOC_Os01g65090.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026650 , Zm00025a037312
Brachypodium PNT71187
Barley HORVU1Hr1G074590.2 , HORVU1Hr1G074590.3 , HORVU1Hr1G074590.1 , HORVU1Hr1G074590.6 , HORVU1Hr1G074590.7 , HORVU1Hr1G074590.4 , HORVU1Hr1G074590.5 , HORVU1Hr1G074590.8 , HORVU1Hr1G074590.9 , HORVU1Hr1G074590.10 , HORVU1Hr1G074590.11 , HORVU1Hr1G074590.12 , HORVU1Hr1G074590.13 , HORVU1Hr1G074590.14 , HORVU1Hr1G074590.15 , HORVU1Hr1G074590.16 , HORVU1Hr1G074590.17
Wheat TraesCS1D02G270500 , TraesCS1B02G280600 , TraesCS1A02G270300
Populus -


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cDNA sequences
Sobic.009G149400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
2 Sobic.001G281400 expressed protein -
3 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
4 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
5 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
6 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
7 Sobic.001G433700 chorismate synthase 2, chloroplast precursor, putative, expressed K01736: chorismate synthase
8 Sobic.004G284500 ORM1, putative, expressed -
9 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
10 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
11 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
12 Sobic.006G264300 GA18008-PA, putative, expressed -
13 Sobic.005G195301 - K02980: RP-S29e, small subunit ribosomal protein S29e
14 Sobic.002G202300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
15 Sobic.002G190900 expressed protein -
16 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
17 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
18 Sobic.002G083266 - K00326: cytochrome-b5 reductase
19 Sobic.002G153500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
20 Sobic.004G334400 ANTH, putative, expressed -


Gene co-expression network
sample Sobic009G149400 Sobic009G149400 Sobic002G187500 Sobic002G187500 Sobic009G149400--Sobic002G187500 Sobic001G281400 Sobic001G281400 Sobic009G149400--Sobic001G281400 Sobic003G285800 Sobic003G285800 Sobic009G149400--Sobic003G285800 Sobic002G267500 Sobic002G267500 Sobic009G149400--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic009G149400--Sobic004G272800 Sobic010G023800 Sobic010G023800 Sobic009G149400--Sobic010G023800 Sobic001G433700 Sobic001G433700 Sobic009G149400--Sobic001G433700 Sobic004G284500 Sobic004G284500 Sobic009G149400--Sobic004G284500 Sobic007G171000 Sobic007G171000 Sobic009G149400--Sobic007G171000 Sobic010G009300 Sobic010G009300 Sobic002G187500--Sobic010G009300 Sobic002G187500--Sobic003G285800 Sobic002G190900 Sobic002G190900 Sobic002G187500--Sobic002G190900 Sobic002G046100 Sobic002G046100 Sobic002G187500--Sobic002G046100 Sobic003G072300 Sobic003G072300 Sobic002G187500--Sobic003G072300 Sobic001G177800 Sobic001G177800 Sobic002G187500--Sobic001G177800 Sobic002G081600 Sobic002G081600 Sobic002G187500--Sobic002G081600 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700 Sobic004G187900 Sobic004G187900 Sobic001G281400--Sobic004G187900 Sobic001G281400--Sobic002G267500 Sobic010G149300 Sobic010G149300 Sobic001G281400--Sobic010G149300 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic010G086200 Sobic010G086200 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic009G008900 Sobic009G008900 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic003G285800--Sobic002G046100 Sobic003G285800--Sobic002G187500 Sobic010G178200 Sobic010G178200 Sobic003G285800--Sobic010G178200 Sobic003G350300 Sobic003G350300 Sobic003G285800--Sobic003G350300 Sobic002G345300 Sobic002G345300 Sobic003G285800--Sobic002G345300 Sobic001G477300 Sobic001G477300 Sobic003G285800--Sobic001G477300 Sobic003G285800--Sobic001G281400 Sobic003G285800--Sobic010G086200 Sobic009G129000 Sobic009G129000 Sobic003G285800--Sobic009G129000 Sobic002G267500--Sobic001G281400 Sobic002G267500--Sobic004G272800 Sobic002G267500--Sobic002G046100 Sobic003G253000 Sobic003G253000 Sobic002G267500--Sobic003G253000 Sobic002G267500--Sobic010G149300 Sobic002G267500--Sobic002G345300 Sobic001G459200 Sobic001G459200 Sobic002G267500--Sobic001G459200 Sobic009G143400 Sobic009G143400 Sobic002G267500--Sobic009G143400 Sobic006G173900 Sobic006G173900 Sobic002G267500--Sobic006G173900 Sobic004G272800--Sobic002G267500 Sobic004G272800--Sobic001G281400 Sobic004G272800--Sobic003G253000 Sobic001G048832 Sobic001G048832 Sobic004G272800--Sobic001G048832 Sobic004G272800--Sobic002G190900 Sobic004G272800--Sobic002G345300 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic007G115100 Sobic007G115100 Sobic010G023800--Sobic007G115100 Sobic010G060500 Sobic010G060500 Sobic010G023800--Sobic010G060500 Sobic004G269700 Sobic004G269700 Sobic010G023800--Sobic004G269700 Sobic001G459900 Sobic001G459900 Sobic010G023800--Sobic001G459900 Sobic003G209000 Sobic003G209000 Sobic010G023800--Sobic003G209000 Sobic010G023800--Sobic009G149400 Sobic008G129400 Sobic008G129400 Sobic010G023800--Sobic008G129400 Sobic010G023800--Sobic002G187500 Sobic001G505500 Sobic001G505500 Sobic010G023800--Sobic001G505500 Sobic001G433700--Sobic009G149400 Sobic001G018800 Sobic001G018800 Sobic001G433700--Sobic001G018800 Sobic001G433700--Sobic002G187500 Sobic001G433700--Sobic010G023800 Sobic002G084500 Sobic002G084500 Sobic001G433700--Sobic002G084500 Sobic001G224400 Sobic001G224400 Sobic001G433700--Sobic001G224400 Sobic001G433700--Sobic004G272800 Sobic001G132100 Sobic001G132100 Sobic001G433700--Sobic001G132100 Sobic010G154700 Sobic010G154700 Sobic001G433700--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic004G284500--Sobic010G213400 Sobic006G182100 Sobic006G182100 Sobic004G284500--Sobic006G182100 Sobic009G111600 Sobic009G111600 Sobic004G284500--Sobic009G111600 Sobic002G153500 Sobic002G153500 Sobic004G284500--Sobic002G153500 Sobic004G284500--Sobic004G272800 Sobic003G368500 Sobic003G368500 Sobic004G284500--Sobic003G368500 Sobic009G033700 Sobic009G033700 Sobic004G284500--Sobic009G033700 Sobic001G445800 Sobic001G445800 Sobic004G284500--Sobic001G445800 Sobic004G284500--Sobic001G281400 Sobic009G155200 Sobic009G155200 Sobic007G171000--Sobic009G155200 Sobic002G195900 Sobic002G195900 Sobic007G171000--Sobic002G195900 Sobic003G429300 Sobic003G429300 Sobic007G171000--Sobic003G429300 Sobic001G119000 Sobic001G119000 Sobic007G171000--Sobic001G119000 Sobic009G177800 Sobic009G177800 Sobic007G171000--Sobic009G177800 Sobic002G359300 Sobic002G359300 Sobic007G171000--Sobic002G359300 Sobic007G171000--Sobic002G046100 Sobic008G111100 Sobic008G111100 Sobic007G171000--Sobic008G111100 Sobic007G137700 Sobic007G137700 Sobic007G171000--Sobic007G137700
Octagon: transcription factors


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