Gene annotation
Transcriptome id Sobic.002G153500.1
Synonym ATRABA4C, Sb02g018890, RABA4C, SMG1
Functional annotation ras-related protein, putative, expressed
UniProt C5X867
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF437
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G47960 : RAB GTPase homolog A4C
RAP-DB (Rice) LOC_Os09g10940.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a001034 , Zm00025a013648
Brachypodium KQJ89680
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
2 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
3 Sobic.004G284500 ORM1, putative, expressed -
4 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
5 Sobic.004G225500 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator
6 Sobic.001G132100 expressed protein -
7 Sobic.008G032100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
9 Sobic.004G204900 glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
10 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
11 Sobic.004G276100 expressed protein -
12 Sobic.010G154700 - -
13 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
14 Sobic.006G182100 ORM1, putative, expressed -
15 Sobic.009G149400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K15849: PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
16 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
18 Sobic.009G111600 expressed protein -
19 Sobic.002G155500 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
20 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4


Gene co-expression network
sample Sobic002G153500 Sobic002G153500 Sobic001G224400 Sobic001G224400 Sobic002G153500--Sobic001G224400 Sobic008G189300 Sobic008G189300 Sobic002G153500--Sobic008G189300 Sobic004G284500 Sobic004G284500 Sobic002G153500--Sobic004G284500 Sobic004G272800 Sobic004G272800 Sobic002G153500--Sobic004G272800 Sobic004G225500 Sobic004G225500 Sobic002G153500--Sobic004G225500 Sobic001G132100 Sobic001G132100 Sobic002G153500--Sobic001G132100 Sobic008G032100 Sobic008G032100 Sobic002G153500--Sobic008G032100 Sobic007G115100 Sobic007G115100 Sobic002G153500--Sobic007G115100 Sobic004G204900 Sobic004G204900 Sobic002G153500--Sobic004G204900 Sobic003G368500 Sobic003G368500 Sobic001G224400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic001G224400--Sobic003G155400 Sobic001G224400--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic001G224400--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic001G224400--Sobic010G213400 Sobic001G224400--Sobic008G189300 Sobic010G153100 Sobic010G153100 Sobic001G224400--Sobic010G153100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900 Sobic008G189300--Sobic004G225500 Sobic008G189300--Sobic004G272800 Sobic008G189300--Sobic001G224400 Sobic008G189300--Sobic002G153500 Sobic008G189300--Sobic010G154700 Sobic008G189300--Sobic001G132100 Sobic002G187500 Sobic002G187500 Sobic008G189300--Sobic002G187500 Sobic001G048832 Sobic001G048832 Sobic008G189300--Sobic001G048832 Sobic001G340500 Sobic001G340500 Sobic008G189300--Sobic001G340500 Sobic004G284500--Sobic010G213400 Sobic006G182100 Sobic006G182100 Sobic004G284500--Sobic006G182100 Sobic009G111600 Sobic009G111600 Sobic004G284500--Sobic009G111600 Sobic004G284500--Sobic002G153500 Sobic004G284500--Sobic004G272800 Sobic004G284500--Sobic003G368500 Sobic009G033700 Sobic009G033700 Sobic004G284500--Sobic009G033700 Sobic001G445800 Sobic001G445800 Sobic004G284500--Sobic001G445800 Sobic001G281400 Sobic001G281400 Sobic004G284500--Sobic001G281400 Sobic002G267500 Sobic002G267500 Sobic004G272800--Sobic002G267500 Sobic004G272800--Sobic001G281400 Sobic003G253000 Sobic003G253000 Sobic004G272800--Sobic003G253000 Sobic004G272800--Sobic001G048832 Sobic002G190900 Sobic002G190900 Sobic004G272800--Sobic002G190900 Sobic002G345300 Sobic002G345300 Sobic004G272800--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic004G225500--Sobic008G189300 Sobic002G155500 Sobic002G155500 Sobic004G225500--Sobic002G155500 Sobic004G225500--Sobic004G272800 Sobic004G300900 Sobic004G300900 Sobic004G225500--Sobic004G300900 Sobic004G225500--Sobic001G048832 Sobic004G225500--Sobic001G340500 Sobic004G225500--Sobic002G153500 Sobic004G225500--Sobic010G154700 Sobic010G121300 Sobic010G121300 Sobic004G225500--Sobic010G121300 Sobic001G132100--Sobic001G048832 Sobic001G132100--Sobic010G154700 Sobic001G132100--Sobic002G190900 Sobic001G132100--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic001G132100--Sobic007G051000 Sobic002G398901 Sobic002G398901 Sobic001G132100--Sobic002G398901 Sobic009G119900 Sobic009G119900 Sobic001G132100--Sobic009G119900 Sobic010G018400 Sobic010G018400 Sobic001G132100--Sobic010G018400 Sobic001G132100--Sobic004G272800 Sobic010G009300 Sobic010G009300 Sobic008G032100--Sobic010G009300 Sobic005G084600 Sobic005G084600 Sobic008G032100--Sobic005G084600 Sobic007G087200 Sobic007G087200 Sobic008G032100--Sobic007G087200 Sobic001G177800 Sobic001G177800 Sobic008G032100--Sobic001G177800 Sobic005G195301 Sobic005G195301 Sobic008G032100--Sobic005G195301 Sobic008G032100--Sobic002G187500 Sobic009G077800 Sobic009G077800 Sobic008G032100--Sobic009G077800 Sobic003G113700 Sobic003G113700 Sobic008G032100--Sobic003G113700 Sobic005G206601 Sobic005G206601 Sobic008G032100--Sobic005G206601 Sobic001G418900 Sobic001G418900 Sobic007G115100--Sobic001G418900 Sobic004G269700 Sobic004G269700 Sobic007G115100--Sobic004G269700 Sobic007G115100--Sobic003G155400 Sobic001G505500 Sobic001G505500 Sobic007G115100--Sobic001G505500 Sobic007G115100--Sobic010G153100 Sobic001G342200 Sobic001G342200 Sobic007G115100--Sobic001G342200 Sobic010G023800 Sobic010G023800 Sobic007G115100--Sobic010G023800 Sobic007G115100--Sobic010G154700 Sobic004G138800 Sobic004G138800 Sobic007G115100--Sobic004G138800 Sobic004G204900--Sobic002G153500 Sobic004G204900--Sobic008G189300 Sobic004G204900--Sobic002G155500 Sobic004G204900--Sobic004G225500 Sobic001G459500 Sobic001G459500 Sobic004G204900--Sobic001G459500 Sobic003G367451 Sobic003G367451 Sobic004G204900--Sobic003G367451 Sobic004G204900--Sobic004G272800 Sobic003G323600 Sobic003G323600 Sobic004G204900--Sobic003G323600 Sobic007G114200 Sobic007G114200 Sobic004G204900--Sobic007G114200
Octagon: transcription factors


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