Gene annotation
Transcriptome id Sobic.006G208200.1,Sobic.006G208200.3,Sobic.006G208200.2
Synonym Sb06g027910, GalAK
Functional annotation GHMP kinases ATP-binding protein, putative, expressed
UniProt A0A1Z5RFZ2 , A0A1Z5RFR4 , C5YFK2
Pfam PF00288 PF10509 PF00288 PF10509 PF08544
Panther DB PTHR10457 PTHR10457:SF11
NCBI CDD KOG0631; Galactokinase
KEGG Orthology K18677; galacturonokinase
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT3G10700 : galacturonic acid kinase
RAP-DB (Rice) LOC_Os04g51880.1,LOC_Os04g51880.5 : GHMP kinases ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a009859
Brachypodium KQJ84463
Barley HORVU2Hr1G100380.1 , HORVU2Hr1G100380.2 , HORVU2Hr1G100380.3
Wheat TraesCS2B02G451100 , TraesCS2D02G428100 , TraesCS2A02G430500 , TraesCS2D02G428100
Populus -


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cDNA sequences
Sobic.006G208200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G215200 expressed protein -
2 Sobic.001G203800 expressed protein -
3 Sobic.001G499500 la domain containing protein, putative, expressed K18757: la-related protein 1
4 Sobic.003G418400 expressed protein -
5 Sobic.003G270100 dehydrin family protein, expressed -
6 Sobic.002G037600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.004G328100 expressed protein -
8 Sobic.010G062900 expressed protein -
9 Sobic.010G009600 OsFBX182 - F-box domain containing protein, expressed -
10 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
11 Sobic.002G309100 phosphate-induced protein 1 conserved region domain containing protein, expressed -
12 Sobic.003G294900 expressed protein -
13 Sobic.001G053350 - -
14 Sobic.001G485500 - -
15 Sobic.005G210500 - K10901: BLM, RECQL3, bloom syndrome protein
16 Sobic.010G255400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
17 Sobic.009G163400 growth regulator related protein, putative, expressed -
18 Sobic.003G308300 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed K01285: lysosomal Pro-X carboxypeptidase
19 Sobic.006G050100 expressed protein -
20 Sobic.005G048600 expressed protein -


Gene co-expression network
sample Sobic006G208200 Sobic006G208200 Sobic004G215200 Sobic004G215200 Sobic006G208200--Sobic004G215200 Sobic001G203800 Sobic001G203800 Sobic006G208200--Sobic001G203800 Sobic001G499500 Sobic001G499500 Sobic006G208200--Sobic001G499500 Sobic003G418400 Sobic003G418400 Sobic006G208200--Sobic003G418400 Sobic003G270100 Sobic003G270100 Sobic006G208200--Sobic003G270100 Sobic002G037600 Sobic002G037600 Sobic006G208200--Sobic002G037600 Sobic004G328100 Sobic004G328100 Sobic006G208200--Sobic004G328100 Sobic010G062900 Sobic010G062900 Sobic006G208200--Sobic010G062900 Sobic010G009600 Sobic010G009600 Sobic006G208200--Sobic010G009600 Sobic001G053350 Sobic001G053350 Sobic004G215200--Sobic001G053350 Sobic004G215200--Sobic010G062900 Sobic004G215200--Sobic006G208200 Sobic001G485500 Sobic001G485500 Sobic004G215200--Sobic001G485500 Sobic004G215200--Sobic001G499500 Sobic009G163400 Sobic009G163400 Sobic004G215200--Sobic009G163400 Sobic002G309100 Sobic002G309100 Sobic004G215200--Sobic002G309100 Sobic007G086600 Sobic007G086600 Sobic004G215200--Sobic007G086600 Sobic010G252100 Sobic010G252100 Sobic004G215200--Sobic010G252100 Sobic001G203800--Sobic003G270100 Sobic001G203800--Sobic004G328100 Sobic001G203800--Sobic006G208200 Sobic001G203800--Sobic002G037600 Sobic005G048600 Sobic005G048600 Sobic001G203800--Sobic005G048600 Sobic001G080800 Sobic001G080800 Sobic001G203800--Sobic001G080800 Sobic001G203800--Sobic004G215200 Sobic003G308300 Sobic003G308300 Sobic001G203800--Sobic003G308300 Sobic001G073700 Sobic001G073700 Sobic001G203800--Sobic001G073700 Sobic001G499500--Sobic010G062900 Sobic006G050100 Sobic006G050100 Sobic001G499500--Sobic006G050100 Sobic001G499500--Sobic004G215200 Sobic008G141100 Sobic008G141100 Sobic001G499500--Sobic008G141100 Sobic002G383700 Sobic002G383700 Sobic001G499500--Sobic002G383700 Sobic001G499500--Sobic007G086600 Sobic003G022000 Sobic003G022000 Sobic001G499500--Sobic003G022000 Sobic001G499500--Sobic001G053350 Sobic010G255400 Sobic010G255400 Sobic001G499500--Sobic010G255400 Sobic005G210500 Sobic005G210500 Sobic003G418400--Sobic005G210500 Sobic001G117900 Sobic001G117900 Sobic003G418400--Sobic001G117900 Sobic009G214500 Sobic009G214500 Sobic003G418400--Sobic009G214500 Sobic003G418400--Sobic004G215200 Sobic003G418400--Sobic006G208200 Sobic001G433600 Sobic001G433600 Sobic003G418400--Sobic001G433600 Sobic003G418400--Sobic002G309100 Sobic010G009700 Sobic010G009700 Sobic003G418400--Sobic010G009700 Sobic001G327100 Sobic001G327100 Sobic003G418400--Sobic001G327100 Sobic003G270100--Sobic001G203800 Sobic003G270100--Sobic003G308300 Sobic003G255700 Sobic003G255700 Sobic003G270100--Sobic003G255700 Sobic001G050500 Sobic001G050500 Sobic003G270100--Sobic001G050500 Sobic004G186300 Sobic004G186300 Sobic003G270100--Sobic004G186300 Sobic006G100266 Sobic006G100266 Sobic003G270100--Sobic006G100266 Sobic003G270100--Sobic004G328100 Sobic001G305900 Sobic001G305900 Sobic003G270100--Sobic001G305900 Sobic003G270100--Sobic006G208200 Sobic001G196800 Sobic001G196800 Sobic002G037600--Sobic001G196800 Sobic003G294900 Sobic003G294900 Sobic002G037600--Sobic003G294900 Sobic002G037600--Sobic001G203800 Sobic002G037600--Sobic006G208200 Sobic002G037600--Sobic004G328100 Sobic006G272300 Sobic006G272300 Sobic002G037600--Sobic006G272300 Sobic001G309200 Sobic001G309200 Sobic002G037600--Sobic001G309200 Sobic005G185200 Sobic005G185200 Sobic002G037600--Sobic005G185200 Sobic002G037600--Sobic003G270100 Sobic002G304500 Sobic002G304500 Sobic004G328100--Sobic002G304500 Sobic002G382100 Sobic002G382100 Sobic004G328100--Sobic002G382100 Sobic008G007800 Sobic008G007800 Sobic004G328100--Sobic008G007800 Sobic002G361500 Sobic002G361500 Sobic004G328100--Sobic002G361500 Sobic005G201200 Sobic005G201200 Sobic004G328100--Sobic005G201200 Sobic002G377900 Sobic002G377900 Sobic004G328100--Sobic002G377900 Sobic002G016000 Sobic002G016000 Sobic004G328100--Sobic002G016000 Sobic004G328100--Sobic001G080800 Sobic010G198400 Sobic010G198400 Sobic004G328100--Sobic010G198400 Sobic010G062900--Sobic002G309100 Sobic003G009000 Sobic003G009000 Sobic010G062900--Sobic003G009000 Sobic009G098700 Sobic009G098700 Sobic010G062900--Sobic009G098700 Sobic010G073900 Sobic010G073900 Sobic010G062900--Sobic010G073900 Sobic001G485700 Sobic001G485700 Sobic010G062900--Sobic001G485700 Sobic001G183666 Sobic001G183666 Sobic010G062900--Sobic001G183666 Sobic006G239500 Sobic006G239500 Sobic010G062900--Sobic006G239500 Sobic001G130600 Sobic001G130600 Sobic010G062900--Sobic001G130600 Sobic010G005100 Sobic010G005100 Sobic010G062900--Sobic010G005100 Sobic010G257500 Sobic010G257500 Sobic010G009600--Sobic010G257500 Sobic002G274700 Sobic002G274700 Sobic010G009600--Sobic002G274700 Sobic008G160600 Sobic008G160600 Sobic010G009600--Sobic008G160600 Sobic001G534400 Sobic001G534400 Sobic010G009600--Sobic001G534400 Sobic008G087200 Sobic008G087200 Sobic010G009600--Sobic008G087200 Sobic010G009600--Sobic006G100266 Sobic003G042200 Sobic003G042200 Sobic010G009600--Sobic003G042200 Sobic010G009600--Sobic004G215200 Sobic006G184200 Sobic006G184200 Sobic010G009600--Sobic006G184200
Octagon: transcription factors


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