Gene annotation
Transcriptome id Sobic.002G406400.1
Synonym Sb02g042040
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5X4T3
Pfam PF01535
Panther DB PTHR24015 PTHR24015:SF457
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G01970 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g46730.2 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a049052
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G406400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G285450 - -
2 Sobic.003G202300 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
3 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
4 Sobic.010G072900 peroxiredoxin, putative, expressed K03564: BCP, PRXQ, thioredoxin-dependent peroxiredoxin
5 Sobic.009G010900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed -
6 Sobic.001G516800 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed K12271: SRP43, signal recognition particle 43 kDa protein
7 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
8 Sobic.001G030200 transcription termination factor nusG family protein, expressed -
9 Sobic.002G019900 gibberellin receptor GID1L2, putative, expressed -
10 Sobic.004G168500 peroxiredoxin, putative, expressed K03386: PRDX2_4, peroxiredoxin 2/4
11 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
12 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
13 Sobic.002G283800 AIG2-like family domain containing protein, expressed -
14 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
15 Sobic.001G484300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@YGGT family protein, putative, expressed K02221: YggT family protein
16 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
17 Sobic.009G157000 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
18 Sobic.009G212000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
19 Sobic.003G132300 MYB family transcription factor, putative, expressed -
20 Sobic.009G179800 - -


Gene co-expression network
sample Sobic002G406400 Sobic002G406400 Sobic002G285450 Sobic002G285450 Sobic002G406400--Sobic002G285450 Sobic003G202300 Sobic003G202300 Sobic002G406400--Sobic003G202300 Sobic001G094200 Sobic001G094200 Sobic002G406400--Sobic001G094200 Sobic010G072900 Sobic010G072900 Sobic002G406400--Sobic010G072900 Sobic009G010900 Sobic009G010900 Sobic002G406400--Sobic009G010900 Sobic001G516800 Sobic001G516800 Sobic002G406400--Sobic001G516800 Sobic004G191200 Sobic004G191200 Sobic002G406400--Sobic004G191200 Sobic001G030200 Sobic001G030200 Sobic002G406400--Sobic001G030200 Sobic002G019900 Sobic002G019900 Sobic002G406400--Sobic002G019900 Sobic002G285450--Sobic002G019900 Sobic002G285450--Sobic002G406400 Sobic009G157000 Sobic009G157000 Sobic002G285450--Sobic009G157000 Sobic002G283800 Sobic002G283800 Sobic002G285450--Sobic002G283800 Sobic004G132400 Sobic004G132400 Sobic002G285450--Sobic004G132400 Sobic002G285450--Sobic001G516800 Sobic002G285450--Sobic009G010900 Sobic002G285450--Sobic001G030200 Sobic007G139000 Sobic007G139000 Sobic002G285450--Sobic007G139000 Sobic003G202300--Sobic004G191200 Sobic008G030000 Sobic008G030000 Sobic003G202300--Sobic008G030000 Sobic001G453300 Sobic001G453300 Sobic003G202300--Sobic001G453300 Sobic004G168500 Sobic004G168500 Sobic003G202300--Sobic004G168500 Sobic009G212000 Sobic009G212000 Sobic003G202300--Sobic009G212000 Sobic001G027600 Sobic001G027600 Sobic003G202300--Sobic001G027600 Sobic003G202300--Sobic001G094200 Sobic004G317900 Sobic004G317900 Sobic003G202300--Sobic004G317900 Sobic007G185100 Sobic007G185100 Sobic003G202300--Sobic007G185100 Sobic003G256200 Sobic003G256200 Sobic001G094200--Sobic003G256200 Sobic003G246400 Sobic003G246400 Sobic001G094200--Sobic003G246400 Sobic010G233800 Sobic010G233800 Sobic001G094200--Sobic010G233800 Sobic001G094200--Sobic004G191200 Sobic001G094200--Sobic001G453300 Sobic001G191000 Sobic001G191000 Sobic001G094200--Sobic001G191000 Sobic001G427000 Sobic001G427000 Sobic001G094200--Sobic001G427000 Sobic001G076500 Sobic001G076500 Sobic001G094200--Sobic001G076500 Sobic001G411300 Sobic001G411300 Sobic001G094200--Sobic001G411300 Sobic009G179800 Sobic009G179800 Sobic010G072900--Sobic009G179800 Sobic010G072900--Sobic010G233800 Sobic004G298100 Sobic004G298100 Sobic010G072900--Sobic004G298100 Sobic010G072900--Sobic003G246400 Sobic010G072900--Sobic007G185100 Sobic010G072900--Sobic004G317900 Sobic010G255600 Sobic010G255600 Sobic010G072900--Sobic010G255600 Sobic003G393800 Sobic003G393800 Sobic010G072900--Sobic003G393800 Sobic010G072900--Sobic001G427000 Sobic009G010900--Sobic008G030000 Sobic009G010900--Sobic004G168500 Sobic007G222600 Sobic007G222600 Sobic009G010900--Sobic007G222600 Sobic004G001200 Sobic004G001200 Sobic009G010900--Sobic004G001200 Sobic009G010900--Sobic003G202300 Sobic008G084200 Sobic008G084200 Sobic009G010900--Sobic008G084200 Sobic009G010900--Sobic010G233800 Sobic009G010900--Sobic001G094200 Sobic006G238000 Sobic006G238000 Sobic009G010900--Sobic006G238000 Sobic010G208000 Sobic010G208000 Sobic001G516800--Sobic010G208000 Sobic001G516800--Sobic002G283800 Sobic001G516800--Sobic001G030200 Sobic001G147400 Sobic001G147400 Sobic001G516800--Sobic001G147400 Sobic004G034500 Sobic004G034500 Sobic001G516800--Sobic004G034500 Sobic002G088200 Sobic002G088200 Sobic001G516800--Sobic002G088200 Sobic001G516800--Sobic002G019900 Sobic001G543500 Sobic001G543500 Sobic001G516800--Sobic001G543500 Sobic001G516800--Sobic009G179800 Sobic004G191200--Sobic001G027600 Sobic006G280050 Sobic006G280050 Sobic004G191200--Sobic006G280050 Sobic004G191200--Sobic003G202300 Sobic004G191200--Sobic001G191000 Sobic004G191200--Sobic004G317900 Sobic004G191200--Sobic001G453300 Sobic007G034500 Sobic007G034500 Sobic004G191200--Sobic007G034500 Sobic004G191200--Sobic003G246400 Sobic002G305700 Sobic002G305700 Sobic004G191200--Sobic002G305700 Sobic001G030200--Sobic010G208000 Sobic001G030200--Sobic002G019900 Sobic004G066300 Sobic004G066300 Sobic001G030200--Sobic004G066300 Sobic001G030200--Sobic001G516800 Sobic004G353900 Sobic004G353900 Sobic001G030200--Sobic004G353900 Sobic008G131200 Sobic008G131200 Sobic001G030200--Sobic008G131200 Sobic004G016700 Sobic004G016700 Sobic001G030200--Sobic004G016700 Sobic001G030200--Sobic004G034500 Sobic004G072000 Sobic004G072000 Sobic001G030200--Sobic004G072000 Sobic002G019900--Sobic001G030200 Sobic002G019900--Sobic002G285450 Sobic002G019900--Sobic010G208000 Sobic002G019900--Sobic001G516800 Sobic002G019900--Sobic007G139000 Sobic003G111600 Sobic003G111600 Sobic002G019900--Sobic003G111600 Sobic002G019900--Sobic004G016700 Sobic001G460700 Sobic001G460700 Sobic002G019900--Sobic001G460700 Sobic002G019900--Sobic002G406400
Octagon: transcription factors


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