Gene annotation
Transcriptome id Sobic.002G402700.1
Synonym GLU1, GLUS, FD-GOGAT, GLS1, FD-GOGAT, GLUS , Sb02g041740
Functional annotation - (PubMedID : 26976818)
ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
UniProt A0A1B6QG06
Pfam PF01493 PF04898 PF01645 PF00310
Panther DB PTHR11938 PTHR11938:SF94
NCBI CDD -
KEGG Orthology K00284; GLU, glutamate synthase (ferredoxin)
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process GO:0015930glutamate synthase activity GO:0006807nitrogen compound metabolic process GO:0016638oxidoreductase activity, acting on the CH-NH2 group of donors GO:0006537glutamate biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G04140 : glutamate synthase 1
RAP-DB (Rice) LOC_Os07g46460.1 : ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a049028
Brachypodium KQK14862 , KQK14861
Barley HORVU2Hr1G022920.22 , HORVU2Hr1G022920.23 , HORVU2Hr1G022920.20 , HORVU2Hr1G022920.21 , HORVU2Hr1G022920.26 , HORVU2Hr1G022920.27 , HORVU2Hr1G022920.24 , HORVU2Hr1G022920.25 , HORVU2Hr1G022920.28 , HORVU2Hr1G022920.29 , HORVU2Hr1G022920.11 , HORVU2Hr1G022920.9 , HORVU2Hr1G022920.8 , HORVU2Hr1G022920.3 , HORVU2Hr1G022920.2 , HORVU2Hr1G022920.1 , HORVU2Hr1G022920.7 , HORVU2Hr1G022920.6 , HORVU2Hr1G022920.5 , HORVU2Hr1G022920.4 , HORVU2Hr1G022920.19 , HORVU2Hr1G022920.18 , HORVU2Hr1G022920.13 , HORVU2Hr1G022920.12 , HORVU2Hr1G022920.10 , HORVU2Hr1G022920.17 , HORVU2Hr1G022920.16 , HORVU2Hr1G022920.15 , HORVU2Hr1G022920.14 , HORVU2Hr1G022920.35 , HORVU2Hr1G022920.34 , HORVU2Hr1G022920.37 , HORVU2Hr1G022920.36 , HORVU2Hr1G022920.31 , HORVU2Hr1G022920.30 , HORVU2Hr1G022920.33 , HORVU2Hr1G022920.32
Wheat TraesCS2D02G132900 , TraesCS2A02G130600 , TraesCS2A02G130600 , TraesCS2B02G152900
Populus PNS97689 , PNS97698 , PNS97692 , PNS97693 , PNS97690 , PNS97691 , PNS97696 , PNS97697 , PNS97694 , PNS97695


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
2 Sobic.008G129900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
4 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
5 Sobic.001G504400 expressed protein -
6 Sobic.005G001700 mitochondrial substrate carrier family protein, putative, expressed -
7 Sobic.001G540600 expressed protein -
8 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
9 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
10 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
11 Sobic.010G125833 - -
12 Sobic.003G036200 NADP-ME(PubMedID : 19549309)@"SbC4-NADP-ME (L-malate:NADP oxidoreductase, E.C. 1.1.1.40)"(PubMedID : 23228551)@NADP-malic enzyme 4(PubMedID : 26465154)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
13 Sobic.007G103400 expressed protein -
14 Sobic.008G074000 OsSCP65 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
15 Sobic.003G042900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
16 Sobic.003G233700 SET domain-containing protein, putative, expressed -
17 Sobic.002G133900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.002G220900 expressed protein -
19 Sobic.002G404800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
20 Sobic.007G105500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AGC_PVPK_like_kin82y.10 - ACG kinases include homologs to PKA, PKG and PKC, expressed -


Gene co-expression network
sample Sobic002G402700 Sobic002G402700 Sobic008G033000 Sobic008G033000 Sobic002G402700--Sobic008G033000 Sobic008G129900 Sobic008G129900 Sobic002G402700--Sobic008G129900 Sobic001G217900 Sobic001G217900 Sobic002G402700--Sobic001G217900 Sobic002G206300 Sobic002G206300 Sobic002G402700--Sobic002G206300 Sobic001G504400 Sobic001G504400 Sobic002G402700--Sobic001G504400 Sobic005G001700 Sobic005G001700 Sobic002G402700--Sobic005G001700 Sobic001G540600 Sobic001G540600 Sobic002G402700--Sobic001G540600 Sobic010G231300 Sobic010G231300 Sobic002G402700--Sobic010G231300 Sobic001G378100 Sobic001G378100 Sobic002G402700--Sobic001G378100 Sobic003G185900 Sobic003G185900 Sobic008G033000--Sobic003G185900 Sobic008G033000--Sobic008G129900 Sobic001G258200 Sobic001G258200 Sobic008G033000--Sobic001G258200 Sobic008G033000--Sobic001G504400 Sobic008G033000--Sobic001G217900 Sobic010G125833 Sobic010G125833 Sobic008G033000--Sobic010G125833 Sobic008G033000--Sobic002G206300 Sobic004G215800 Sobic004G215800 Sobic008G033000--Sobic004G215800 Sobic009G038701 Sobic009G038701 Sobic008G033000--Sobic009G038701 Sobic008G129900--Sobic010G231300 Sobic008G129900--Sobic008G033000 Sobic008G129900--Sobic001G258200 Sobic008G129900--Sobic001G217900 Sobic006G235400 Sobic006G235400 Sobic008G129900--Sobic006G235400 Sobic003G097600 Sobic003G097600 Sobic008G129900--Sobic003G097600 Sobic001G263100 Sobic001G263100 Sobic008G129900--Sobic001G263100 Sobic008G129900--Sobic002G206300 Sobic003G341300 Sobic003G341300 Sobic008G129900--Sobic003G341300 Sobic007G058100 Sobic007G058100 Sobic001G217900--Sobic007G058100 Sobic001G217900--Sobic010G231300 Sobic001G217900--Sobic008G129900 Sobic001G217900--Sobic001G378100 Sobic001G217900--Sobic001G258200 Sobic001G217900--Sobic002G206300 Sobic001G217900--Sobic001G263100 Sobic001G217900--Sobic008G033000 Sobic001G217900--Sobic001G540600 Sobic002G206300--Sobic009G038701 Sobic002G206300--Sobic001G504400 Sobic001G180200 Sobic001G180200 Sobic002G206300--Sobic001G180200 Sobic001G536700 Sobic001G536700 Sobic002G206300--Sobic001G536700 Sobic009G207900 Sobic009G207900 Sobic002G206300--Sobic009G207900 Sobic002G206300--Sobic001G258200 Sobic002G206300--Sobic008G129900 Sobic002G206300--Sobic001G217900 Sobic002G206300--Sobic003G341300 Sobic001G504400--Sobic002G206300 Sobic007G103400 Sobic007G103400 Sobic001G504400--Sobic007G103400 Sobic001G504400--Sobic009G038701 Sobic001G504400--Sobic003G185900 Sobic001G504400--Sobic001G258200 Sobic001G504400--Sobic010G125833 Sobic001G504400--Sobic008G033000 Sobic001G504400--Sobic001G180200 Sobic001G504400--Sobic001G378100 Sobic008G001900 Sobic008G001900 Sobic005G001700--Sobic008G001900 Sobic002G220900 Sobic002G220900 Sobic005G001700--Sobic002G220900 Sobic005G204200 Sobic005G204200 Sobic005G001700--Sobic005G204200 Sobic010G067100 Sobic010G067100 Sobic005G001700--Sobic010G067100 Sobic005G063000 Sobic005G063000 Sobic005G001700--Sobic005G063000 Sobic005G001700--Sobic003G185900 Sobic005G001700--Sobic002G402700 Sobic003G036200 Sobic003G036200 Sobic005G001700--Sobic003G036200 Sobic007G009200 Sobic007G009200 Sobic005G001700--Sobic007G009200 Sobic001G540600--Sobic001G378100 Sobic001G540600--Sobic001G217900 Sobic001G077300 Sobic001G077300 Sobic001G540600--Sobic001G077300 Sobic009G170200 Sobic009G170200 Sobic001G540600--Sobic009G170200 Sobic001G540600--Sobic002G206300 Sobic001G540600--Sobic010G231300 Sobic004G179400 Sobic004G179400 Sobic001G540600--Sobic004G179400 Sobic001G540600--Sobic009G207900 Sobic003G073800 Sobic003G073800 Sobic001G540600--Sobic003G073800 Sobic010G231300--Sobic008G129900 Sobic010G231300--Sobic006G235400 Sobic010G231300--Sobic001G217900 Sobic010G231300--Sobic001G263100 Sobic006G161500 Sobic006G161500 Sobic010G231300--Sobic006G161500 Sobic007G133000 Sobic007G133000 Sobic010G231300--Sobic007G133000 Sobic010G231300--Sobic003G341300 Sobic010G231300--Sobic001G180200 Sobic002G162400 Sobic002G162400 Sobic010G231300--Sobic002G162400 Sobic001G378100--Sobic003G073800 Sobic001G378100--Sobic001G217900 Sobic001G378100--Sobic001G504400 Sobic001G378100--Sobic001G077300 Sobic001G378100--Sobic001G540600 Sobic001G378100--Sobic001G536700 Sobic006G232600 Sobic006G232600 Sobic001G378100--Sobic006G232600 Sobic001G378100--Sobic009G170200 Sobic001G378100--Sobic001G258200
Octagon: transcription factors


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