Gene annotation
Transcriptome id Sobic.002G218900.1
Synonym Sb02g026050
Functional annotation plant viral response family protein, putative, expressed
UniProt C5XDS2
Pfam PF04819
Panther DB PTHR16007 PTHR16007:SF35
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55240 : Family of unknown function (DUF716)
RAP-DB (Rice) LOC_Os09g27250.1 : plant viral response family protein, putative, expressed
MaizeGDB (Corn) Zm00025a047191
Brachypodium PNT64692
Barley HORVU5Hr1G066700.1 , HORVU5Hr1G066680.1 , HORVU5Hr1G066720.2 , HORVU5Hr1G066720.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G072600 expressed protein -
2 Sobic.004G047600 plant-specific domain TIGR01627 family protein, expressed -
3 Sobic.001G360700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K13083: flavonoid 3',5'-hydroxylase
4 Sobic.002G207200 - -
5 Sobic.003G352700 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Laccase 17 LAC17 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
6 Sobic.007G047300 encodes the lignin biosynthetic enzyme caffeic acid O-methyltransferase (COMT)(PubMedID : 20585750)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylate the tricin precursors luteolin and selgin(PubMedID : 28594846)@monolignol biosynthetic enzyme caffeic acid O-methyl transferase (COMT)(PubMedID : 12756532)@lignin biosynthesis(PubMedID : 12756532)@key enzymes in the phenylptropanoid pathway(PubMedID : 28119720)@O-methyltransferase, putative, expressed K05279: flavonol 3-O-methyltransferase
7 Sobic.001G406700 expressed protein -
8 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
9 Sobic.007G119500 expressed protein -
10 Sobic.002G167600 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
11 Sobic.009G034300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
12 Sobic.003G082700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
13 Sobic.004G111100 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
15 Sobic.003G254700 glycosyltransferase family 43 protein, putative, expressed -
16 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
17 Sobic.009G026101 - -
18 Sobic.001G224300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@-(PubMedID : 28944535)@CESA7 - cellulose synthase, expressed K10999: cellulose synthase A
19 Sobic.002G203900 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
20 Sobic.009G170500 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3


Gene co-expression network
sample Sobic002G218900 Sobic002G218900 Sobic001G072600 Sobic001G072600 Sobic002G218900--Sobic001G072600 Sobic004G047600 Sobic004G047600 Sobic002G218900--Sobic004G047600 Sobic001G360700 Sobic001G360700 Sobic002G218900--Sobic001G360700 Sobic002G207200 Sobic002G207200 Sobic002G218900--Sobic002G207200 Sobic003G352700 Sobic003G352700 Sobic002G218900--Sobic003G352700 Sobic007G047300 Sobic007G047300 Sobic002G218900--Sobic007G047300 Sobic001G406700 Sobic001G406700 Sobic002G218900--Sobic001G406700 Sobic006G144600 Sobic006G144600 Sobic002G218900--Sobic006G144600 Sobic007G119500 Sobic007G119500 Sobic002G218900--Sobic007G119500 Sobic002G167600 Sobic002G167600 Sobic001G072600--Sobic002G167600 Sobic001G072600--Sobic002G218900 Sobic001G072600--Sobic007G119500 Sobic001G072600--Sobic001G360700 Sobic001G072600--Sobic004G047600 Sobic001G072600--Sobic006G144600 Sobic009G246700 Sobic009G246700 Sobic001G072600--Sobic009G246700 Sobic001G072600--Sobic007G047300 Sobic009G170500 Sobic009G170500 Sobic001G072600--Sobic009G170500 Sobic004G047600--Sobic001G360700 Sobic004G047600--Sobic003G352700 Sobic004G047600--Sobic007G047300 Sobic001G471800 Sobic001G471800 Sobic004G047600--Sobic001G471800 Sobic002G146000 Sobic002G146000 Sobic004G047600--Sobic002G146000 Sobic004G047600--Sobic002G167600 Sobic002G254900 Sobic002G254900 Sobic004G047600--Sobic002G254900 Sobic002G203900 Sobic002G203900 Sobic004G047600--Sobic002G203900 Sobic009G162300 Sobic009G162300 Sobic004G047600--Sobic009G162300 Sobic001G360700--Sobic004G047600 Sobic001G360700--Sobic007G047300 Sobic001G360700--Sobic002G167600 Sobic001G360700--Sobic002G203900 Sobic001G360700--Sobic001G471800 Sobic001G360700--Sobic002G254900 Sobic001G360700--Sobic002G146000 Sobic004G193500 Sobic004G193500 Sobic001G360700--Sobic004G193500 Sobic001G360700--Sobic001G072600 Sobic002G207200--Sobic007G047300 Sobic002G207200--Sobic004G047600 Sobic002G207200--Sobic001G360700 Sobic002G207200--Sobic003G352700 Sobic002G207200--Sobic002G218900 Sobic002G207200--Sobic002G167600 Sobic001G460400 Sobic001G460400 Sobic002G207200--Sobic001G460400 Sobic004G111100 Sobic004G111100 Sobic002G207200--Sobic004G111100 Sobic009G034300 Sobic009G034300 Sobic002G207200--Sobic009G034300 Sobic003G082700 Sobic003G082700 Sobic003G352700--Sobic003G082700 Sobic003G352700--Sobic004G047600 Sobic009G008800 Sobic009G008800 Sobic003G352700--Sobic009G008800 Sobic003G239100 Sobic003G239100 Sobic003G352700--Sobic003G239100 Sobic001G068500 Sobic001G068500 Sobic003G352700--Sobic001G068500 Sobic001G484000 Sobic001G484000 Sobic003G352700--Sobic001G484000 Sobic001G059500 Sobic001G059500 Sobic003G352700--Sobic001G059500 Sobic005G127200 Sobic005G127200 Sobic003G352700--Sobic005G127200 Sobic003G352700--Sobic007G047300 Sobic007G047300--Sobic001G360700 Sobic007G047300--Sobic004G047600 Sobic007G047300--Sobic009G162300 Sobic007G047300--Sobic003G352700 Sobic007G047300--Sobic001G471800 Sobic007G047300--Sobic004G111100 Sobic007G047300--Sobic002G146000 Sobic007G047300--Sobic002G207200 Sobic007G047300--Sobic002G203900 Sobic003G387500 Sobic003G387500 Sobic001G406700--Sobic003G387500 Sobic001G406700--Sobic006G144600 Sobic001G399200 Sobic001G399200 Sobic001G406700--Sobic001G399200 Sobic001G406700--Sobic009G170500 Sobic010G232500 Sobic010G232500 Sobic001G406700--Sobic010G232500 Sobic001G406700--Sobic002G167600 Sobic005G229100 Sobic005G229100 Sobic001G406700--Sobic005G229100 Sobic001G406700--Sobic007G119500 Sobic001G406700--Sobic009G246700 Sobic006G144600--Sobic001G406700 Sobic006G144600--Sobic010G232500 Sobic006G144600--Sobic003G387500 Sobic006G144600--Sobic002G167600 Sobic006G144600--Sobic009G170500 Sobic006G144600--Sobic001G399200 Sobic006G144600--Sobic005G229100 Sobic006G144600--Sobic007G119500 Sobic007G223600 Sobic007G223600 Sobic006G144600--Sobic007G223600 Sobic007G119500--Sobic009G170500 Sobic003G270400 Sobic003G270400 Sobic007G119500--Sobic003G270400 Sobic007G119500--Sobic004G047600 Sobic007G119500--Sobic001G072600 Sobic007G119500--Sobic002G167600 Sobic003G378800 Sobic003G378800 Sobic007G119500--Sobic003G378800 Sobic007G119500--Sobic001G360700 Sobic007G119500--Sobic006G144600 Sobic007G119500--Sobic001G406700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.