Gene annotation
Transcriptome id Sobic.002G147500.2,Sobic.002G147500.3
Synonym Sb02g015990
Functional annotation early fruit mRNA, putative, expressed
UniProt A0A1W0W3X4
Pfam -
Panther DB PTHR31365 PTHR31365:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32610 : copper ion binding
RAP-DB (Rice) LOC_Os01g08410.1 : early fruit mRNA, putative, expressed
MaizeGDB (Corn) Zm00025a035762 , Zm00025a005394 , Zm00025a023182
Brachypodium KQK03010
Barley HORVU3Hr1G022020.3 , HORVU3Hr1G022020.2 , HORVU3Hr1G022020.1
Wheat TraesCS3D02G120900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G330600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
2 Sobic.009G013200 - -
3 Sobic.007G147300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
4 Sobic.006G279000 expressed protein -
5 Sobic.007G122932 - -
6 Sobic.007G123000 sex determination protein tasselseed-2, putative, expressed -
7 Sobic.005G075000 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
8 Sobic.009G086800 no apical meristem protein, putative, expressed -
9 Sobic.010G209300 expressed protein -
10 Sobic.004G090300 OsFBX46 - F-box domain containing protein, expressed -
11 Sobic.009G021300 Jacalin-like lectin domain containing protein, putative, expressed -
12 Sobic.006G036201 - -
13 Sobic.006G271400 methyl-CpG binding domain containing protein, expressed -
14 Sobic.004G090200 OsFBX46 - F-box domain containing protein, expressed -
15 Sobic.002G408700 OsFBX259 - F-box domain containing protein, expressed -
16 Sobic.002G291132 - -
17 Sobic.008G001700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
18 Sobic.003G291100 - -
19 Sobic.005G074900 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.003G363300 hydrolase, alpha/beta fold family protein, putative, expressed -


Gene co-expression network
sample Sobic002G147500 Sobic002G147500 Sobic001G330600 Sobic001G330600 Sobic002G147500--Sobic001G330600 Sobic009G013200 Sobic009G013200 Sobic002G147500--Sobic009G013200 Sobic007G147300 Sobic007G147300 Sobic002G147500--Sobic007G147300 Sobic006G279000 Sobic006G279000 Sobic002G147500--Sobic006G279000 Sobic007G122932 Sobic007G122932 Sobic002G147500--Sobic007G122932 Sobic007G123000 Sobic007G123000 Sobic002G147500--Sobic007G123000 Sobic005G075000 Sobic005G075000 Sobic002G147500--Sobic005G075000 Sobic009G086800 Sobic009G086800 Sobic002G147500--Sobic009G086800 Sobic010G209300 Sobic010G209300 Sobic002G147500--Sobic010G209300 Sobic001G330600--Sobic002G147500 Sobic001G330600--Sobic009G013200 Sobic001G330600--Sobic007G122932 Sobic001G330600--Sobic007G147300 Sobic001G330600--Sobic007G123000 Sobic001G330600--Sobic005G075000 Sobic001G330600--Sobic006G279000 Sobic001G330600--Sobic010G209300 Sobic009G021300 Sobic009G021300 Sobic001G330600--Sobic009G021300 Sobic009G013200--Sobic001G330600 Sobic009G013200--Sobic007G122932 Sobic009G013200--Sobic002G147500 Sobic003G213100 Sobic003G213100 Sobic009G013200--Sobic003G213100 Sobic009G013200--Sobic005G075000 Sobic005G003100 Sobic005G003100 Sobic009G013200--Sobic005G003100 Sobic009G013200--Sobic007G123000 Sobic009G051201 Sobic009G051201 Sobic009G013200--Sobic009G051201 Sobic003G225800 Sobic003G225800 Sobic009G013200--Sobic003G225800 Sobic007G147300--Sobic009G021300 Sobic007G147300--Sobic007G123000 Sobic007G147300--Sobic007G122932 Sobic008G001700 Sobic008G001700 Sobic007G147300--Sobic008G001700 Sobic007G147300--Sobic009G086800 Sobic008G071900 Sobic008G071900 Sobic007G147300--Sobic008G071900 Sobic007G147300--Sobic010G209300 Sobic002G408700 Sobic002G408700 Sobic007G147300--Sobic002G408700 Sobic004G116200 Sobic004G116200 Sobic007G147300--Sobic004G116200 Sobic006G279000--Sobic002G147500 Sobic004G090300 Sobic004G090300 Sobic006G279000--Sobic004G090300 Sobic006G279000--Sobic001G330600 Sobic006G036201 Sobic006G036201 Sobic006G279000--Sobic006G036201 Sobic005G074900 Sobic005G074900 Sobic006G279000--Sobic005G074900 Sobic003G363300 Sobic003G363300 Sobic006G279000--Sobic003G363300 Sobic006G279000--Sobic005G075000 Sobic006G271400 Sobic006G271400 Sobic006G279000--Sobic006G271400 Sobic001G234000 Sobic001G234000 Sobic006G279000--Sobic001G234000 Sobic007G122932--Sobic009G021300 Sobic007G122932--Sobic007G147300 Sobic007G122932--Sobic007G123000 Sobic005G001500 Sobic005G001500 Sobic007G122932--Sobic005G001500 Sobic007G122932--Sobic002G408700 Sobic007G122932--Sobic010G209300 Sobic007G122932--Sobic009G013200 Sobic003G307600 Sobic003G307600 Sobic007G122932--Sobic003G307600 Sobic007G122932--Sobic008G001700 Sobic007G123000--Sobic007G147300 Sobic007G123000--Sobic007G122932 Sobic007G123000--Sobic009G021300 Sobic007G123000--Sobic008G001700 Sobic007G123000--Sobic005G001500 Sobic007G123000--Sobic002G408700 Sobic007G123000--Sobic010G209300 Sobic007G123000--Sobic008G071900 Sobic007G123000--Sobic009G086800 Sobic005G075000--Sobic006G271400 Sobic005G075000--Sobic010G209300 Sobic006G031000 Sobic006G031000 Sobic005G075000--Sobic006G031000 Sobic005G075000--Sobic005G003100 Sobic005G075000--Sobic009G013200 Sobic005G075000--Sobic007G122932 Sobic005G075000--Sobic001G330600 Sobic005G075000--Sobic009G051201 Sobic003G291100 Sobic003G291100 Sobic005G075000--Sobic003G291100 Sobic009G086800--Sobic007G147300 Sobic009G086800--Sobic004G116200 Sobic009G086800--Sobic008G001700 Sobic009G061800 Sobic009G061800 Sobic009G086800--Sobic009G061800 Sobic002G291132 Sobic002G291132 Sobic009G086800--Sobic002G291132 Sobic002G088000 Sobic002G088000 Sobic009G086800--Sobic002G088000 Sobic005G188000 Sobic005G188000 Sobic009G086800--Sobic005G188000 Sobic003G350900 Sobic003G350900 Sobic009G086800--Sobic003G350900 Sobic004G171500 Sobic004G171500 Sobic009G086800--Sobic004G171500 Sobic010G209300--Sobic002G408700 Sobic010G209300--Sobic007G122932 Sobic010G209300--Sobic009G021300 Sobic010G209300--Sobic003G291100 Sobic010G209300--Sobic005G001500 Sobic010G209300--Sobic006G271400 Sobic001G142600 Sobic001G142600 Sobic010G209300--Sobic001G142600 Sobic010G209300--Sobic007G147300 Sobic010G058000 Sobic010G058000 Sobic010G209300--Sobic010G058000
Octagon: transcription factors


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