Hb_156853_010

Information

Type -
Description -
Location Contig156853: 6379-7707
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03350g
description hypothetical protein
nr
ID XP_011031655.1
description PREDICTED: vinorine synthase-like [Populus euphratica]
swissprot
ID Q70PR7
description Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2
trembl
ID U5G7B1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s03350g PE=4 SV=1
Gene Ontology
ID GO:0016747
description vinorine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156853_010 0.0 - - PREDICTED: vinorine synthase-like [Populus euphratica]
2 Hb_000334_100 0.0204289584 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
3 Hb_000008_100 0.0204940109 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
4 Hb_002391_280 0.0206360261 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
5 Hb_002817_020 0.0206972609 - - -
6 Hb_000489_050 0.0209663705 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
7 Hb_003667_030 0.0215535557 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
8 Hb_000221_010 0.0218262423 - - polyprotein [Oryza australiensis]
9 Hb_001019_110 0.0230487767 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
10 Hb_000381_060 0.0232541494 - - -
11 Hb_002151_140 0.0245890755 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
12 Hb_001132_020 0.0247396994 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_000784_050 0.025597194 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
14 Hb_000280_070 0.0259179198 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
15 Hb_012143_010 0.0265015916 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera]
16 Hb_000307_080 0.02717331 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000173_070 0.0278390052 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
18 Hb_003995_040 0.0283067551 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
19 Hb_000417_240 0.0284041417 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
20 Hb_046615_050 0.0287578083 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]

Gene co-expression network

sample Hb_156853_010 Hb_156853_010 Hb_000334_100 Hb_000334_100 Hb_156853_010--Hb_000334_100 Hb_000008_100 Hb_000008_100 Hb_156853_010--Hb_000008_100 Hb_002391_280 Hb_002391_280 Hb_156853_010--Hb_002391_280 Hb_002817_020 Hb_002817_020 Hb_156853_010--Hb_002817_020 Hb_000489_050 Hb_000489_050 Hb_156853_010--Hb_000489_050 Hb_003667_030 Hb_003667_030 Hb_156853_010--Hb_003667_030 Hb_000334_100--Hb_000489_050 Hb_000334_100--Hb_000008_100 Hb_000334_100--Hb_002391_280 Hb_000334_100--Hb_002817_020 Hb_000334_100--Hb_003667_030 Hb_000221_010 Hb_000221_010 Hb_000334_100--Hb_000221_010 Hb_000008_100--Hb_002391_280 Hb_000008_100--Hb_002817_020 Hb_000008_100--Hb_000221_010 Hb_000008_100--Hb_000489_050 Hb_001019_110 Hb_001019_110 Hb_000008_100--Hb_001019_110 Hb_002391_280--Hb_002817_020 Hb_002391_280--Hb_000221_010 Hb_002391_280--Hb_001019_110 Hb_000381_060 Hb_000381_060 Hb_002391_280--Hb_000381_060 Hb_002817_020--Hb_000221_010 Hb_002817_020--Hb_001019_110 Hb_002817_020--Hb_000381_060 Hb_000489_050--Hb_003667_030 Hb_000489_050--Hb_002391_280 Hb_000489_050--Hb_002817_020 Hb_002151_140 Hb_002151_140 Hb_000489_050--Hb_002151_140 Hb_003667_030--Hb_002151_140 Hb_000784_050 Hb_000784_050 Hb_003667_030--Hb_000784_050 Hb_000280_070 Hb_000280_070 Hb_003667_030--Hb_000280_070 Hb_003667_030--Hb_000008_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 14.9025 4.53618 0 0.016156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis