Hb_001274_010

Information

Type -
Description -
Location Contig1274: 8992-9347
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0000166
description abc transporter f family member 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001274_010 0.0 - - -
2 Hb_157349_010 0.0089158739 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
3 Hb_000483_170 0.0243070492 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
4 Hb_007586_020 0.0331290734 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_004888_050 0.0347394801 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_000589_430 0.0367171419 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
7 Hb_001792_010 0.0598625258 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
8 Hb_002641_150 0.0606246032 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
9 Hb_001998_040 0.0616981438 - - ATP binding protein, putative [Ricinus communis]
10 Hb_002260_230 0.0622120275 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
11 Hb_000463_110 0.0702571907 - - -
12 Hb_002686_370 0.0704870827 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
13 Hb_092416_010 0.0709773061 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
14 Hb_000085_110 0.0716097802 - - hypothetical protein JCGZ_00957 [Jatropha curcas]
15 Hb_000245_240 0.0725455335 - - -
16 Hb_088224_010 0.0737871264 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
17 Hb_142295_010 0.0770177384 - - -
18 Hb_000368_130 0.0784936211 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000055_100 0.0792625058 - - polyprotein [Oryza australiensis]
20 Hb_165085_010 0.0806309081 - - hypothetical protein JCGZ_19461 [Jatropha curcas]

Gene co-expression network

sample Hb_001274_010 Hb_001274_010 Hb_157349_010 Hb_157349_010 Hb_001274_010--Hb_157349_010 Hb_000483_170 Hb_000483_170 Hb_001274_010--Hb_000483_170 Hb_007586_020 Hb_007586_020 Hb_001274_010--Hb_007586_020 Hb_004888_050 Hb_004888_050 Hb_001274_010--Hb_004888_050 Hb_000589_430 Hb_000589_430 Hb_001274_010--Hb_000589_430 Hb_001792_010 Hb_001792_010 Hb_001274_010--Hb_001792_010 Hb_157349_010--Hb_007586_020 Hb_157349_010--Hb_004888_050 Hb_157349_010--Hb_000483_170 Hb_157349_010--Hb_000589_430 Hb_000085_110 Hb_000085_110 Hb_157349_010--Hb_000085_110 Hb_000483_170--Hb_000589_430 Hb_000483_170--Hb_001792_010 Hb_002641_150 Hb_002641_150 Hb_000483_170--Hb_002641_150 Hb_001998_040 Hb_001998_040 Hb_000483_170--Hb_001998_040 Hb_007586_020--Hb_004888_050 Hb_007586_020--Hb_000085_110 Hb_000245_240 Hb_000245_240 Hb_007586_020--Hb_000245_240 Hb_088224_010 Hb_088224_010 Hb_007586_020--Hb_088224_010 Hb_004888_050--Hb_000085_110 Hb_004888_050--Hb_000245_240 Hb_004888_050--Hb_088224_010 Hb_000589_430--Hb_001792_010 Hb_000589_430--Hb_002641_150 Hb_000589_430--Hb_001998_040 Hb_002260_230 Hb_002260_230 Hb_000589_430--Hb_002260_230 Hb_000463_110 Hb_000463_110 Hb_000589_430--Hb_000463_110 Hb_001792_010--Hb_002641_150 Hb_001792_010--Hb_001998_040 Hb_001792_010--Hb_002260_230 Hb_001792_010--Hb_000463_110 Hb_002686_370 Hb_002686_370 Hb_001792_010--Hb_002686_370 Hb_092416_010 Hb_092416_010 Hb_001792_010--Hb_092416_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.34904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.212163 0

CAGE analysis