Hb_000589_430

Information

Type -
Description -
Location Contig589: 374078-376375
Sequence    

Annotation

kegg
ID pop:POPTR_0012s00560g
description hypothetical protein
nr
ID KDP44902.1
description hypothetical protein JCGZ_01402 [Jatropha curcas]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID A0A067L916
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01402 PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_430 0.0 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
2 Hb_000483_170 0.0124142433 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
3 Hb_001792_010 0.0231640768 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
4 Hb_002641_150 0.0239270078 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
5 Hb_001998_040 0.0250017764 - - ATP binding protein, putative [Ricinus communis]
6 Hb_002260_230 0.0255162585 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
7 Hb_000463_110 0.0335716755 - - -
8 Hb_002686_370 0.0338018849 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
9 Hb_092416_010 0.0342927896 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
10 Hb_001274_010 0.0367171419 - - -
11 Hb_142295_010 0.04034212 - - -
12 Hb_165085_010 0.0439610552 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
13 Hb_157349_010 0.0456272989 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
14 Hb_007586_020 0.0698131486 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
15 Hb_004888_050 0.071421107 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_004246_010 0.096792412 - - -
17 Hb_000085_110 0.1082127622 - - hypothetical protein JCGZ_00957 [Jatropha curcas]
18 Hb_000245_240 0.1091459367 - - -
19 Hb_088224_010 0.1103840619 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
20 Hb_000368_130 0.115076931 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000589_430 Hb_000589_430 Hb_000483_170 Hb_000483_170 Hb_000589_430--Hb_000483_170 Hb_001792_010 Hb_001792_010 Hb_000589_430--Hb_001792_010 Hb_002641_150 Hb_002641_150 Hb_000589_430--Hb_002641_150 Hb_001998_040 Hb_001998_040 Hb_000589_430--Hb_001998_040 Hb_002260_230 Hb_002260_230 Hb_000589_430--Hb_002260_230 Hb_000463_110 Hb_000463_110 Hb_000589_430--Hb_000463_110 Hb_001274_010 Hb_001274_010 Hb_000483_170--Hb_001274_010 Hb_157349_010 Hb_157349_010 Hb_000483_170--Hb_157349_010 Hb_000483_170--Hb_001792_010 Hb_000483_170--Hb_002641_150 Hb_000483_170--Hb_001998_040 Hb_001792_010--Hb_002641_150 Hb_001792_010--Hb_001998_040 Hb_001792_010--Hb_002260_230 Hb_001792_010--Hb_000463_110 Hb_002686_370 Hb_002686_370 Hb_001792_010--Hb_002686_370 Hb_092416_010 Hb_092416_010 Hb_001792_010--Hb_092416_010 Hb_002641_150--Hb_001998_040 Hb_002641_150--Hb_002260_230 Hb_002641_150--Hb_000463_110 Hb_002641_150--Hb_002686_370 Hb_002641_150--Hb_092416_010 Hb_001998_040--Hb_002260_230 Hb_001998_040--Hb_000463_110 Hb_001998_040--Hb_002686_370 Hb_001998_040--Hb_092416_010 Hb_002260_230--Hb_000463_110 Hb_002260_230--Hb_002686_370 Hb_002260_230--Hb_092416_010 Hb_000463_110--Hb_002686_370 Hb_000463_110--Hb_092416_010 Hb_142295_010 Hb_142295_010 Hb_000463_110--Hb_142295_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.109445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0793791 0

CAGE analysis