Hb_000483_170

Information

Type transcription factor
Description TF Family: NAC
Location Contig483: 138438-140176
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11830g
description POPTRDRAFT_778489; hypothetical protein
nr
ID XP_012084694.1
description PREDICTED: protein FEZ [Jatropha curcas]
swissprot
ID Q9ZVH0
description Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1
trembl
ID R4N5L2
description NAC transcription factor 031 OS=Jatropha curcas GN=JCGZ_19841 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein fez

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_170 0.0 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
2 Hb_000589_430 0.0124142433 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
3 Hb_001274_010 0.0243070492 - - -
4 Hb_157349_010 0.0332201437 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
5 Hb_001792_010 0.0355746093 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
6 Hb_002641_150 0.0363373374 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
7 Hb_001998_040 0.0374118113 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002260_230 0.0379261488 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
9 Hb_000463_110 0.0459790009 - - -
10 Hb_002686_370 0.0462091286 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
11 Hb_092416_010 0.0466998578 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
12 Hb_142295_010 0.0527468545 - - -
13 Hb_165085_010 0.0563642431 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
14 Hb_007586_020 0.0574179503 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
15 Hb_004888_050 0.0590269155 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_000085_110 0.0958491924 - - hypothetical protein JCGZ_00957 [Jatropha curcas]
17 Hb_000245_240 0.0967833391 - - -
18 Hb_088224_010 0.0980227697 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
19 Hb_000368_130 0.1027207476 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000055_100 0.1034881924 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_000483_170 Hb_000483_170 Hb_000589_430 Hb_000589_430 Hb_000483_170--Hb_000589_430 Hb_001274_010 Hb_001274_010 Hb_000483_170--Hb_001274_010 Hb_157349_010 Hb_157349_010 Hb_000483_170--Hb_157349_010 Hb_001792_010 Hb_001792_010 Hb_000483_170--Hb_001792_010 Hb_002641_150 Hb_002641_150 Hb_000483_170--Hb_002641_150 Hb_001998_040 Hb_001998_040 Hb_000483_170--Hb_001998_040 Hb_000589_430--Hb_001792_010 Hb_000589_430--Hb_002641_150 Hb_000589_430--Hb_001998_040 Hb_002260_230 Hb_002260_230 Hb_000589_430--Hb_002260_230 Hb_000463_110 Hb_000463_110 Hb_000589_430--Hb_000463_110 Hb_001274_010--Hb_157349_010 Hb_007586_020 Hb_007586_020 Hb_001274_010--Hb_007586_020 Hb_004888_050 Hb_004888_050 Hb_001274_010--Hb_004888_050 Hb_001274_010--Hb_000589_430 Hb_001274_010--Hb_001792_010 Hb_157349_010--Hb_007586_020 Hb_157349_010--Hb_004888_050 Hb_157349_010--Hb_000589_430 Hb_000085_110 Hb_000085_110 Hb_157349_010--Hb_000085_110 Hb_001792_010--Hb_002641_150 Hb_001792_010--Hb_001998_040 Hb_001792_010--Hb_002260_230 Hb_001792_010--Hb_000463_110 Hb_002686_370 Hb_002686_370 Hb_001792_010--Hb_002686_370 Hb_092416_010 Hb_092416_010 Hb_001792_010--Hb_092416_010 Hb_002641_150--Hb_001998_040 Hb_002641_150--Hb_002260_230 Hb_002641_150--Hb_000463_110 Hb_002641_150--Hb_002686_370 Hb_002641_150--Hb_092416_010 Hb_001998_040--Hb_002260_230 Hb_001998_040--Hb_000463_110 Hb_001998_040--Hb_002686_370 Hb_001998_040--Hb_092416_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0191106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0130617 0

CAGE analysis