Gene annotation
Transcriptome id Sobic.006G015800.1,Sobic.006G015800.2,Sobic.006G015800.3
Synonym LDA, PULI, ATPU1, Sb06g001540, ATLDA, PU1
Functional annotation 1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC (PubMedID : 21853065)
Alpha amylase, catalytic domain containing protein, expressed
UniProt A5Y2S4 , A0A1B6PJH1 , A5Y2Q2 , A0A1B6PJG3 , G3FN00 , M1NKW8 , M1PKW7 , G3FMY1 , A5Y2T3
Pfam PF02922 PF11852
Panther DB PTHR10357 PTHR10357:SF99
NCBI CDD KOG0470; 1,4-alpha-glucan branching enzyme/starch branching enzyme II
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G04360 : limit dextrinase
RAP-DB (Rice) LOC_Os08g40930.1 : Alpha amylase, catalytic domain containing protein, expressed
MaizeGDB (Corn) Zm00025a012291
Brachypodium KQJ81408 , KQJ81407
Barley HORVU7Hr1G027860.1 , HORVU7Hr1G027860.2 , HORVU7Hr1G027860.3 , HORVU7Hr1G027860.4 , HORVU7Hr1G027860.5 , HORVU7Hr1G027860.6 , HORVU7Hr1G027860.7 , HORVU7Hr1G027860.8 , HORVU7Hr1G027860.9 , HORVU7Hr1G027860.23 , HORVU7Hr1G027860.22 , HORVU7Hr1G027860.21 , HORVU7Hr1G027860.20 , HORVU7Hr1G027860.25 , HORVU7Hr1G027860.24 , HORVU7Hr1G027860.18 , HORVU7Hr1G027860.19 , HORVU7Hr1G027860.12 , HORVU7Hr1G027860.13 , HORVU7Hr1G027860.10 , HORVU7Hr1G027860.11 , HORVU7Hr1G027860.16 , HORVU7Hr1G027860.17 , HORVU7Hr1G027860.14 , HORVU7Hr1G027860.15
Wheat TraesCS7A02G133500 , TraesCS7A02G133500 , TraesCS7D02G133100 , TraesCS7B02G034600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G092600 seven in absentia protein family protein, expressed -
2 Sobic.004G212350 - -
3 Sobic.005G082300 - -
4 Sobic.002G172200 receptor-like protein kinase 5 precursor, putative, expressed -
5 Sobic.002G100000 OsFBL33 - F-box domain and LRR containing protein, expressed -
6 Sobic.004G322901 - -
7 Sobic.001G371600 - -
8 Sobic.005G032500 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
9 Sobic.001G489075 - -
10 Sobic.003G106400 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed K01824: cholestenol Delta-isomerase
11 Sobic.004G220900 ethylene-insensitive protein 2, putative, expressed -
12 Sobic.005G083280 - -
13 Sobic.009G021400 Jacalin-like lectin domain containing protein, putative, expressed -
14 Sobic.007G037200 expressed protein -
15 Sobic.004G139700 OsSCP7 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
16 Sobic.002G172100 receptor-like protein kinase 5 precursor, putative, expressed -
17 Sobic.003G266100 ESP4, putative, expressed K06100: symplekin
18 Sobic.009G061900 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
19 Sobic.002G409300 expressed protein -
20 Sobic.005G171800 OsFBDUF20 - F-box and DUF domain containing protein, expressed -


Gene co-expression network
sample Sobic006G015800 Sobic006G015800 Sobic003G092600 Sobic003G092600 Sobic006G015800--Sobic003G092600 Sobic004G212350 Sobic004G212350 Sobic006G015800--Sobic004G212350 Sobic005G082300 Sobic005G082300 Sobic006G015800--Sobic005G082300 Sobic002G172200 Sobic002G172200 Sobic006G015800--Sobic002G172200 Sobic002G100000 Sobic002G100000 Sobic006G015800--Sobic002G100000 Sobic004G322901 Sobic004G322901 Sobic006G015800--Sobic004G322901 Sobic001G371600 Sobic001G371600 Sobic006G015800--Sobic001G371600 Sobic005G032500 Sobic005G032500 Sobic006G015800--Sobic005G032500 Sobic001G489075 Sobic001G489075 Sobic006G015800--Sobic001G489075 Sobic002G015800 Sobic002G015800 Sobic003G092600--Sobic002G015800 Sobic005G083280 Sobic005G083280 Sobic003G092600--Sobic005G083280 Sobic001G261529 Sobic001G261529 Sobic003G092600--Sobic001G261529 Sobic003G092600--Sobic004G322901 Sobic009G014900 Sobic009G014900 Sobic003G092600--Sobic009G014900 Sobic003G092600--Sobic006G015800 Sobic004G262100 Sobic004G262100 Sobic003G092600--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic003G092600--Sobic001G324800 Sobic001G509100 Sobic001G509100 Sobic003G092600--Sobic001G509100 Sobic007G187100 Sobic007G187100 Sobic004G212350--Sobic007G187100 Sobic009G061900 Sobic009G061900 Sobic004G212350--Sobic009G061900 Sobic004G212350--Sobic002G100000 Sobic008G168400 Sobic008G168400 Sobic004G212350--Sobic008G168400 Sobic005G079300 Sobic005G079300 Sobic004G212350--Sobic005G079300 Sobic001G129900 Sobic001G129900 Sobic004G212350--Sobic001G129900 Sobic002G381600 Sobic002G381600 Sobic004G212350--Sobic002G381600 Sobic004G139700 Sobic004G139700 Sobic004G212350--Sobic004G139700 Sobic002G409300 Sobic002G409300 Sobic004G212350--Sobic002G409300 Sobic005G082300--Sobic002G172200 Sobic003G294800 Sobic003G294800 Sobic005G082300--Sobic003G294800 Sobic002G172100 Sobic002G172100 Sobic005G082300--Sobic002G172100 Sobic005G188800 Sobic005G188800 Sobic005G082300--Sobic005G188800 Sobic003G266100 Sobic003G266100 Sobic005G082300--Sobic003G266100 Sobic005G147500 Sobic005G147500 Sobic005G082300--Sobic005G147500 Sobic001G511400 Sobic001G511400 Sobic005G082300--Sobic001G511400 Sobic009G057100 Sobic009G057100 Sobic005G082300--Sobic009G057100 Sobic006G081400 Sobic006G081400 Sobic005G082300--Sobic006G081400 Sobic002G172200--Sobic005G082300 Sobic002G172200--Sobic002G172100 Sobic002G172200--Sobic003G266100 Sobic002G172200--Sobic001G511400 Sobic002G172200--Sobic003G294800 Sobic002G172200--Sobic005G147500 Sobic002G015400 Sobic002G015400 Sobic002G172200--Sobic002G015400 Sobic002G172200--Sobic005G188800 Sobic001G284700 Sobic001G284700 Sobic002G172200--Sobic001G284700 Sobic005G089101 Sobic005G089101 Sobic002G100000--Sobic005G089101 Sobic002G100000--Sobic004G212350 Sobic007G037200 Sobic007G037200 Sobic002G100000--Sobic007G037200 Sobic010G181900 Sobic010G181900 Sobic002G100000--Sobic010G181900 Sobic002G100000--Sobic005G032500 Sobic002G217000 Sobic002G217000 Sobic002G100000--Sobic002G217000 Sobic002G100000--Sobic008G168400 Sobic004G220900 Sobic004G220900 Sobic002G100000--Sobic004G220900 Sobic002G100000--Sobic007G187100 Sobic004G322901--Sobic005G083280 Sobic004G322901--Sobic001G261529 Sobic004G322901--Sobic003G092600 Sobic004G322901--Sobic009G014900 Sobic004G322901--Sobic006G015800 Sobic007G126000 Sobic007G126000 Sobic004G322901--Sobic007G126000 Sobic002G147466 Sobic002G147466 Sobic004G322901--Sobic002G147466 Sobic006G018751 Sobic006G018751 Sobic004G322901--Sobic006G018751 Sobic004G322901--Sobic002G015800 Sobic001G371600--Sobic005G082300 Sobic001G371600--Sobic002G172200 Sobic001G371600--Sobic005G147500 Sobic001G371600--Sobic002G172100 Sobic001G371600--Sobic009G057100 Sobic009G058300 Sobic009G058300 Sobic001G371600--Sobic009G058300 Sobic001G371600--Sobic001G284700 Sobic006G264800 Sobic006G264800 Sobic001G371600--Sobic006G264800 Sobic001G371600--Sobic005G188800 Sobic005G032500--Sobic007G037200 Sobic005G032500--Sobic002G100000 Sobic008G031400 Sobic008G031400 Sobic005G032500--Sobic008G031400 Sobic002G058900 Sobic002G058900 Sobic005G032500--Sobic002G058900 Sobic008G159300 Sobic008G159300 Sobic005G032500--Sobic008G159300 Sobic005G032500--Sobic002G217000 Sobic005G032500--Sobic004G220900 Sobic002G101200 Sobic002G101200 Sobic005G032500--Sobic002G101200 Sobic005G032500--Sobic004G212350 Sobic005G174000 Sobic005G174000 Sobic001G489075--Sobic005G174000 Sobic008G088900 Sobic008G088900 Sobic001G489075--Sobic008G088900 Sobic005G146966 Sobic005G146966 Sobic001G489075--Sobic005G146966 Sobic004G171600 Sobic004G171600 Sobic001G489075--Sobic004G171600 Sobic001G489075--Sobic002G409300 Sobic001G489075--Sobic006G264800 Sobic002G108300 Sobic002G108300 Sobic001G489075--Sobic002G108300 Sobic002G293100 Sobic002G293100 Sobic001G489075--Sobic002G293100 Sobic001G200900 Sobic001G200900 Sobic001G489075--Sobic001G200900
Octagon: transcription factors


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