Gene annotation
Transcriptome id Sobic.K041900.1
Synonym Sb0073s002030
Functional annotation expressed protein
UniProt A0A109NDA6 , C6JS64 , C6JS63
Pfam -
Panther DB PTHR31008 PTHR31008:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G43310 : COP1-interacting protein-related
RAP-DB (Rice) LOC_Os07g26440.1 : expressed protein
MaizeGDB (Corn) Zm00025a013561 , Zm00025a009159 , Zm00025a045820
Brachypodium PNT73742 , KQK16456 , KQK11944 , KQK11943
Barley HORVU5Hr1G125620.5 , HORVU5Hr1G125620.4 , HORVU5Hr1G125620.7 , HORVU5Hr1G125620.6 , HORVU5Hr1G125620.1 , HORVU5Hr1G125620.3 , HORVU5Hr1G125620.2 , HORVU5Hr1G125620.9 , HORVU5Hr1G125620.8 , HORVU5Hr1G125620.10 , HORVU5Hr1G125620.13 , HORVU5Hr1G125620.12 , HORVU5Hr1G125620.15 , HORVU5Hr1G125620.14 , HORVU5Hr1G125620.17 , HORVU5Hr1G125620.16
Wheat TraesCS5B02G568700 , TraesCS5B02G568700 , TraesCS7B02G003000 , TraesCS7B02G003000 , TraesCS7B02G002900 , TraesCS5D02G561000 , TraesCS5B02G568800
Populus -


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cDNA sequences
Sobic.K041900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
2 Sobic.001G437500 plant protein of unknown function DUF869 domain containing protein, expressed -
3 Sobic.009G125900 expressed protein -
4 Sobic.010G090500 expressed protein -
5 Sobic.001G183600 galactosyltransferase, putative, expressed -
6 Sobic.001G159800 KIP1, putative, expressed -
7 Sobic.004G243800 HEAT repeat family protein, putative, expressed -
8 Sobic.001G037400 expressed protein -
9 Sobic.003G017500 TTL1, putative, expressed -
10 Sobic.009G026101 - -
11 Sobic.002G118700 -(PubMedID : 28944535)@CESA3 - cellulose synthase, expressed K10999: cellulose synthase A
12 Sobic.009G061000 DNA binding protein, putative, expressed -
13 Sobic.009G167100 TBC domain containing protein, expressed -
14 Sobic.001G073150 - K15449: tRNA wybutosine-synthesizing protein 1
15 Sobic.008G174900 IQ calmodulin-binding motif domain containing protein, expressed -
16 Sobic.004G051300 galactosyltransferase, putative, expressed -
17 Sobic.009G206500 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
18 Sobic.003G277200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
19 Sobic.004G265600 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.001G196000 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E


Gene co-expression network
sample SobicK041900 SobicK041900 Sobic009G063400 Sobic009G063400 SobicK041900--Sobic009G063400 Sobic001G437500 Sobic001G437500 SobicK041900--Sobic001G437500 Sobic009G125900 Sobic009G125900 SobicK041900--Sobic009G125900 Sobic010G090500 Sobic010G090500 SobicK041900--Sobic010G090500 Sobic001G183600 Sobic001G183600 SobicK041900--Sobic001G183600 Sobic001G159800 Sobic001G159800 SobicK041900--Sobic001G159800 Sobic004G243800 Sobic004G243800 SobicK041900--Sobic004G243800 Sobic001G037400 Sobic001G037400 SobicK041900--Sobic001G037400 Sobic003G017500 Sobic003G017500 SobicK041900--Sobic003G017500 Sobic009G063400--Sobic009G125900 Sobic002G075500 Sobic002G075500 Sobic009G063400--Sobic002G075500 Sobic009G026101 Sobic009G026101 Sobic009G063400--Sobic009G026101 Sobic002G118700 Sobic002G118700 Sobic009G063400--Sobic002G118700 Sobic010G096100 Sobic010G096100 Sobic009G063400--Sobic010G096100 Sobic001G334900 Sobic001G334900 Sobic009G063400--Sobic001G334900 Sobic009G063400--Sobic010G090500 Sobic001G208600 Sobic001G208600 Sobic009G063400--Sobic001G208600 Sobic006G075000 Sobic006G075000 Sobic009G063400--Sobic006G075000 Sobic001G196000 Sobic001G196000 Sobic001G437500--Sobic001G196000 Sobic001G437500--Sobic004G243800 Sobic004G274800 Sobic004G274800 Sobic001G437500--Sobic004G274800 Sobic009G206500 Sobic009G206500 Sobic001G437500--Sobic009G206500 Sobic007G139500 Sobic007G139500 Sobic001G437500--Sobic007G139500 Sobic001G437500--Sobic001G159800 Sobic009G061000 Sobic009G061000 Sobic001G437500--Sobic009G061000 Sobic006G267500 Sobic006G267500 Sobic001G437500--Sobic006G267500 Sobic002G276600 Sobic002G276600 Sobic001G437500--Sobic002G276600 Sobic009G125900--Sobic009G063400 Sobic009G125900--Sobic009G026101 Sobic009G125900--Sobic002G075500 Sobic009G125900--Sobic002G118700 Sobic009G125900--Sobic010G090500 Sobic004G265600 Sobic004G265600 Sobic009G125900--Sobic004G265600 Sobic009G125900--Sobic010G096100 Sobic004G051300 Sobic004G051300 Sobic009G125900--Sobic004G051300 Sobic003G254700 Sobic003G254700 Sobic009G125900--Sobic003G254700 Sobic010G090500--Sobic001G159800 Sobic010G120300 Sobic010G120300 Sobic010G090500--Sobic010G120300 Sobic010G090500--Sobic009G206500 Sobic009G079100 Sobic009G079100 Sobic010G090500--Sobic009G079100 Sobic010G090500--Sobic001G437500 Sobic010G090500--Sobic006G267500 Sobic001G073150 Sobic001G073150 Sobic010G090500--Sobic001G073150 Sobic010G090500--Sobic009G061000 Sobic010G090500--Sobic009G125900 Sobic001G183600--Sobic009G206500 Sobic001G183600--Sobic009G026101 Sobic002G275500 Sobic002G275500 Sobic001G183600--Sobic002G275500 Sobic001G183600--Sobic009G063400 Sobic001G029800 Sobic001G029800 Sobic001G183600--Sobic001G029800 Sobic007G119500 Sobic007G119500 Sobic001G183600--Sobic007G119500 Sobic001G183600--Sobic010G090500 Sobic003G366300 Sobic003G366300 Sobic001G183600--Sobic003G366300 Sobic002G393200 Sobic002G393200 Sobic001G183600--Sobic002G393200 Sobic001G159800--Sobic010G090500 Sobic001G159800--Sobic001G437500 Sobic001G159800--Sobic009G061000 Sobic001G159800--Sobic009G206500 Sobic009G073400 Sobic009G073400 Sobic001G159800--Sobic009G073400 Sobic001G159800--Sobic003G017500 Sobic001G159800--Sobic001G196000 Sobic006G173200 Sobic006G173200 Sobic001G159800--Sobic006G173200 Sobic001G507200 Sobic001G507200 Sobic001G159800--Sobic001G507200 Sobic004G243800--Sobic001G437500 Sobic004G243800--Sobic001G037400 Sobic004G243800--Sobic001G196000 Sobic010G165100 Sobic010G165100 Sobic004G243800--Sobic010G165100 Sobic004G243800--Sobic002G276600 Sobic009G211800 Sobic009G211800 Sobic004G243800--Sobic009G211800 Sobic008G174900 Sobic008G174900 Sobic004G243800--Sobic008G174900 Sobic002G045200 Sobic002G045200 Sobic004G243800--Sobic002G045200 Sobic002G142500 Sobic002G142500 Sobic004G243800--Sobic002G142500 Sobic001G037400--Sobic004G243800 Sobic008G039800 Sobic008G039800 Sobic001G037400--Sobic008G039800 Sobic003G277200 Sobic003G277200 Sobic001G037400--Sobic003G277200 Sobic003G419600 Sobic003G419600 Sobic001G037400--Sobic003G419600 Sobic005G110600 Sobic005G110600 Sobic001G037400--Sobic005G110600 Sobic004G288500 Sobic004G288500 Sobic001G037400--Sobic004G288500 Sobic001G037400--Sobic001G196000 Sobic003G006100 Sobic003G006100 Sobic001G037400--Sobic003G006100 Sobic001G037400--Sobic009G211800 Sobic002G383100 Sobic002G383100 Sobic003G017500--Sobic002G383100 Sobic001G051300 Sobic001G051300 Sobic003G017500--Sobic001G051300 Sobic007G130900 Sobic007G130900 Sobic003G017500--Sobic007G130900 Sobic003G017500--Sobic001G437500 Sobic003G017500--Sobic007G139500 Sobic003G017500--Sobic009G073400 Sobic003G017500--Sobic009G206500 Sobic003G017500--Sobic001G159800 Sobic003G410600 Sobic003G410600 Sobic003G017500--Sobic003G410600
Octagon: transcription factors


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