Gene annotation
Transcriptome id Sobic.010G258500.1
Synonym
Functional annotation arogenate dehydrogenase 1, chloroplast precursor, putative, expressed
UniProt A0A194YLK4
Pfam PF02153
Panther DB PTHR11811:SF30 PTHR11811
NCBI CDD KOG3794; CBF1-interacting corepressor CIR and related proteins
KEGG Orthology -
Gene Ontology GO:0004665; prephenate dehydrogenase (NADP+) activity GO:0006571tyrosine biosynthetic process GO:0008977prephenate dehydrogenase (NAD+) activity


Orthologs (automatic annotation)
TAIR AT1G15710 : prephenate dehydrogenase family protein
RAP-DB (Rice) LOC_Os06g49505.1 : arogenate dehydrogenase 1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a041753 , Zm00025a050963 , Zm00025a018439 , Zm00025a018434 , Zm00025a018433
Brachypodium KQK17495 , PNT75563
Barley HORVU7Hr1G095460.1 , HORVU7Hr1G095490.1 , HORVU7Hr1G095460.3 , HORVU7Hr1G095490.3 , HORVU7Hr1G095490.4 , HORVU7Hr1G095490.5 , HORVU7Hr1G095480.9 , HORVU7Hr1G095480.8 , HORVU7Hr1G095480.7 , HORVU7Hr1G095480.6 , HORVU7Hr1G095480.4 , HORVU7Hr1G095480.3 , HORVU7Hr1G095480.2 , HORVU7Hr1G095550.1 , HORVU7Hr1G095550.2 , HORVU7Hr1G095490.2 , HORVU7Hr1G095460.2
Wheat TraesCS7A02G408900 , TraesCS7D02G402200
Populus -


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cDNA sequences
Sobic.010G258500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G178800 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed K00549: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
2 Sobic.006G038200 receptor protein kinase, putative, expressed -
3 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
4 Sobic.004G182500 NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed K18121: glyoxylate/succinic semialdehyde reductase
5 Sobic.009G232200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
6 Sobic.007G130800 aldehyde dehydrogenase, putative, expressed K00130: betB, betaine-aldehyde dehydrogenase
7 Sobic.002G075500 CESA8 - cellulose synthase, expressed K10999: cellulose synthase A
8 Sobic.006G237200 vacuolar ATP synthase subunit D 1, putative, expressed K02149: ATPeV1D, V-type H+-transporting ATPase subunit D
9 Sobic.001G436100 UDP-glucuronate 4-epimerase, putative, expressed K08679: UDP-glucuronate 4-epimerase
10 Sobic.010G123300 expressed protein -
11 Sobic.003G244200 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
12 Sobic.002G338400 uncharacterized secreted protein, putative, expressed -
13 Sobic.002G252000 CHIT13 - Chitinase family protein precursor, expressed -
14 Sobic.008G093200 expressed protein -
15 Sobic.004G007600 glycosyltransferase protein, putative, expressed -
16 Sobic.001G012600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
17 Sobic.001G035600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@induced by either light or pathogen inoculation in the BTx623 seedlings(PubMedID : 20529887)@"The bmr30 mutant harbors a mutation in a phenylpropanoid biosynthetic gene that is key to the interconnection between flavonoids and monolignols, both of which are utilized for lignin synthesis in the grasses."(PubMedID : 34925394)@expressed protein K01859: chalcone isomerase
18 Sobic.004G282700 synthase, putative, expressed K12451: 3,5-epimerase/4-reductase
19 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
20 Sobic.001G334900 X8 domain containing protein, expressed -


Gene co-expression network
sample Sobic010G258500 Sobic010G258500 Sobic008G178800 Sobic008G178800 Sobic010G258500--Sobic008G178800 Sobic006G038200 Sobic006G038200 Sobic010G258500--Sobic006G038200 Sobic003G216500 Sobic003G216500 Sobic010G258500--Sobic003G216500 Sobic004G182500 Sobic004G182500 Sobic010G258500--Sobic004G182500 Sobic009G232200 Sobic009G232200 Sobic010G258500--Sobic009G232200 Sobic007G130800 Sobic007G130800 Sobic010G258500--Sobic007G130800 Sobic002G075500 Sobic002G075500 Sobic010G258500--Sobic002G075500 Sobic006G237200 Sobic006G237200 Sobic010G258500--Sobic006G237200 Sobic001G436100 Sobic001G436100 Sobic010G258500--Sobic001G436100 Sobic008G178800--Sobic006G038200 Sobic009G063400 Sobic009G063400 Sobic008G178800--Sobic009G063400 Sobic008G178800--Sobic010G258500 Sobic002G347300 Sobic002G347300 Sobic008G178800--Sobic002G347300 Sobic009G125900 Sobic009G125900 Sobic008G178800--Sobic009G125900 Sobic004G282700 Sobic004G282700 Sobic008G178800--Sobic004G282700 Sobic008G178800--Sobic009G232200 Sobic009G017500 Sobic009G017500 Sobic008G178800--Sobic009G017500 Sobic010G067500 Sobic010G067500 Sobic008G178800--Sobic010G067500 Sobic003G170300 Sobic003G170300 Sobic006G038200--Sobic003G170300 Sobic006G038200--Sobic004G282700 Sobic002G338400 Sobic002G338400 Sobic006G038200--Sobic002G338400 Sobic010G264300 Sobic010G264300 Sobic006G038200--Sobic010G264300 Sobic006G038200--Sobic008G178800 Sobic006G038200--Sobic009G017500 Sobic006G038200--Sobic003G216500 Sobic001G035600 Sobic001G035600 Sobic006G038200--Sobic001G035600 Sobic006G075000 Sobic006G075000 Sobic006G038200--Sobic006G075000 Sobic002G410700 Sobic002G410700 Sobic003G216500--Sobic002G410700 Sobic003G216500--Sobic004G182500 Sobic009G240700 Sobic009G240700 Sobic003G216500--Sobic009G240700 Sobic001G473400 Sobic001G473400 Sobic003G216500--Sobic001G473400 Sobic003G216500--Sobic003G170300 Sobic002G073800 Sobic002G073800 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic006G020900 Sobic006G020900 Sobic003G216500--Sobic006G020900 Sobic001G290700 Sobic001G290700 Sobic003G216500--Sobic001G290700 Sobic004G182500--Sobic003G216500 Sobic003G103400 Sobic003G103400 Sobic004G182500--Sobic003G103400 Sobic004G182500--Sobic002G073800 Sobic008G093200 Sobic008G093200 Sobic004G182500--Sobic008G093200 Sobic004G182500--Sobic010G258500 Sobic001G376700 Sobic001G376700 Sobic004G182500--Sobic001G376700 Sobic006G281200 Sobic006G281200 Sobic004G182500--Sobic006G281200 Sobic003G325500 Sobic003G325500 Sobic004G182500--Sobic003G325500 Sobic001G215500 Sobic001G215500 Sobic004G182500--Sobic001G215500 Sobic001G334900 Sobic001G334900 Sobic009G232200--Sobic001G334900 Sobic009G232200--Sobic002G347300 Sobic009G232200--Sobic002G338400 Sobic006G278100 Sobic006G278100 Sobic009G232200--Sobic006G278100 Sobic009G232200--Sobic006G075000 Sobic004G168700 Sobic004G168700 Sobic009G232200--Sobic004G168700 Sobic002G072200 Sobic002G072200 Sobic009G232200--Sobic002G072200 Sobic009G032600 Sobic009G032600 Sobic009G232200--Sobic009G032600 Sobic002G252000 Sobic002G252000 Sobic009G232200--Sobic002G252000 Sobic005G224500 Sobic005G224500 Sobic007G130800--Sobic005G224500 Sobic007G190200 Sobic007G190200 Sobic007G130800--Sobic007G190200 Sobic006G074300 Sobic006G074300 Sobic007G130800--Sobic006G074300 Sobic002G301200 Sobic002G301200 Sobic007G130800--Sobic002G301200 Sobic001G147300 Sobic001G147300 Sobic007G130800--Sobic001G147300 Sobic007G130800--Sobic008G178800 Sobic007G130800--Sobic010G258500 Sobic001G012200 Sobic001G012200 Sobic007G130800--Sobic001G012200 Sobic004G257700 Sobic004G257700 Sobic007G130800--Sobic004G257700 Sobic002G075500--Sobic009G063400 Sobic002G075500--Sobic009G125900 Sobic002G118700 Sobic002G118700 Sobic002G075500--Sobic002G118700 Sobic009G026101 Sobic009G026101 Sobic002G075500--Sobic009G026101 Sobic004G051300 Sobic004G051300 Sobic002G075500--Sobic004G051300 Sobic001G099100 Sobic001G099100 Sobic002G075500--Sobic001G099100 Sobic007G180900 Sobic007G180900 Sobic002G075500--Sobic007G180900 Sobic003G254700 Sobic003G254700 Sobic002G075500--Sobic003G254700 Sobic006G156600 Sobic006G156600 Sobic002G075500--Sobic006G156600 Sobic006G237200--Sobic002G410700 Sobic009G256000 Sobic009G256000 Sobic006G237200--Sobic009G256000 Sobic008G021200 Sobic008G021200 Sobic006G237200--Sobic008G021200 Sobic007G161200 Sobic007G161200 Sobic006G237200--Sobic007G161200 Sobic006G237200--Sobic003G216500 Sobic002G186300 Sobic002G186300 Sobic006G237200--Sobic002G186300 Sobic006G237200--Sobic006G020900 Sobic005G018800 Sobic005G018800 Sobic006G237200--Sobic005G018800 Sobic001G110300 Sobic001G110300 Sobic006G237200--Sobic001G110300 Sobic001G116000 Sobic001G116000 Sobic001G436100--Sobic001G116000 Sobic001G196100 Sobic001G196100 Sobic001G436100--Sobic001G196100 Sobic009G194200 Sobic009G194200 Sobic001G436100--Sobic009G194200 Sobic001G026600 Sobic001G026600 Sobic001G436100--Sobic001G026600 Sobic004G331900 Sobic004G331900 Sobic001G436100--Sobic004G331900 Sobic001G436100--Sobic002G075500 Sobic001G313301 Sobic001G313301 Sobic001G436100--Sobic001G313301 Sobic004G333100 Sobic004G333100 Sobic001G436100--Sobic004G333100 Sobic003G319000 Sobic003G319000 Sobic001G436100--Sobic003G319000
Octagon: transcription factors


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