Gene annotation
Transcriptome id Sobic.010G096100.1
Synonym ARAC8, Sb10g008380, ATROP10, ROP10, ATRAC8
Functional annotation ras-related protein, putative, expressed
UniProt C5Z7F5
Pfam PF08477
Panther DB PTHR24072 PTHR24072:SF174
NCBI CDD KOG0393; Ras-related small GTPase, Rho type
KEGG Orthology K04392; Ras-related C3 botulinum toxin substrate 1
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT3G48040 : RHO-related protein from plants 10
RAP-DB (Rice) LOC_Os06g12790.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a049438 , Zm00025a044215 , Zm00025a022001 , Zm00025a037935
Brachypodium KQK05418 , KQK01965 , KQK01966
Barley HORVU6Hr1G076210.8 , HORVU6Hr1G076210.9 , HORVU6Hr1G076210.4 , HORVU6Hr1G076210.5 , HORVU6Hr1G076210.6 , HORVU6Hr1G076210.7 , HORVU6Hr1G076210.1 , HORVU6Hr1G076210.2 , HORVU6Hr1G076210.3 , HORVU7Hr1G038980.9 , HORVU7Hr1G038980.8 , HORVU7Hr1G038980.7 , HORVU7Hr1G038980.5 , HORVU7Hr1G038980.4 , HORVU7Hr1G038980.3 , HORVU7Hr1G038980.2 , HORVU7Hr1G038980.1 , HORVU1Hr1G076880.10 , HORVU1Hr1G076880.11 , HORVU1Hr1G076880.9 , HORVU1Hr1G076880.6 , HORVU1Hr1G076880.7 , HORVU1Hr1G076880.4 , HORVU1Hr1G076880.5 , HORVU1Hr1G076880.1 , HORVU7Hr1G038980.17 , HORVU7Hr1G038980.16 , HORVU7Hr1G038980.15 , HORVU7Hr1G038980.14 , HORVU7Hr1G038980.13 , HORVU7Hr1G038980.12 , HORVU7Hr1G038980.11 , HORVU7Hr1G038980.10 , HORVU7Hr1G038980.18
Wheat TraesCS6B02G338000 , TraesCS1D02G336200 , TraesCS7B02G096200 , TraesCS7D02G192400 , TraesCS6A02G309000 , TraesCS6D02G288300 , TraesCS1A02G333600 , TraesCS1B02G347000 , TraesCS7A02G191400 , TraesCS6A02G309000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G096100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G075000 Late embryogenesis abundant hydroxyproline-rich glycoprotein("PubMedID : 26759170,PubMedID : 24597475")@harpin-induced protein 1 domain containing protein, expressed -
2 Sobic.001G208600 receptor kinase like protein, putative, expressed -
3 Sobic.009G063400 "CESA1-like or CESA10-like homologous to the Arabidopsis, up-regulated in addition of GA3"(PubMedID : 26198258)@CESA1 - cellulose synthase, expressed K10999: cellulose synthase A
4 Sobic.009G026101 - -
5 Sobic.009G125900 expressed protein -
6 Sobic.009G017500 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
7 Sobic.009G251100 TTL1, putative, expressed K09527: DnaJ homolog subfamily C member 7
8 Sobic.001G484000 hydrolase, alpha/beta fold family protein, putative, expressed -
9 Sobic.010G114000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
10 Sobic.009G226900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein, putative, expressed -
11 Sobic.006G096500 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
12 Sobic.003G099166 - -
13 Sobic.008G174900 IQ calmodulin-binding motif domain containing protein, expressed -
14 Sobic.009G206500 respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
15 Sobic.009G232200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
16 Sobic.001G196000 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
17 Sobic.001G437500 plant protein of unknown function DUF869 domain containing protein, expressed -
18 Sobic.007G040301 - -
19 Sobic.010G090500 expressed protein -
20 Sobic.004G243800 HEAT repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic010G096100 Sobic010G096100 Sobic006G075000 Sobic006G075000 Sobic010G096100--Sobic006G075000 Sobic001G208600 Sobic001G208600 Sobic010G096100--Sobic001G208600 Sobic009G063400 Sobic009G063400 Sobic010G096100--Sobic009G063400 Sobic009G026101 Sobic009G026101 Sobic010G096100--Sobic009G026101 Sobic009G125900 Sobic009G125900 Sobic010G096100--Sobic009G125900 Sobic009G017500 Sobic009G017500 Sobic010G096100--Sobic009G017500 Sobic009G251100 Sobic009G251100 Sobic010G096100--Sobic009G251100 Sobic001G484000 Sobic001G484000 Sobic010G096100--Sobic001G484000 Sobic010G114000 Sobic010G114000 Sobic010G096100--Sobic010G114000 Sobic006G075000--Sobic010G096100 Sobic006G075000--Sobic001G208600 Sobic006G075000--Sobic001G484000 Sobic009G226900 Sobic009G226900 Sobic006G075000--Sobic009G226900 Sobic002G072200 Sobic002G072200 Sobic006G075000--Sobic002G072200 Sobic003G099166 Sobic003G099166 Sobic006G075000--Sobic003G099166 Sobic003G352700 Sobic003G352700 Sobic006G075000--Sobic003G352700 Sobic006G075000--Sobic009G026101 Sobic002G338400 Sobic002G338400 Sobic006G075000--Sobic002G338400 Sobic005G145100 Sobic005G145100 Sobic001G208600--Sobic005G145100 Sobic001G208600--Sobic003G099166 Sobic001G208600--Sobic006G075000 Sobic003G239100 Sobic003G239100 Sobic001G208600--Sobic003G239100 Sobic001G208600--Sobic009G017500 Sobic002G053900 Sobic002G053900 Sobic001G208600--Sobic002G053900 Sobic001G334900 Sobic001G334900 Sobic001G208600--Sobic001G334900 Sobic002G030800 Sobic002G030800 Sobic001G208600--Sobic002G030800 Sobic001G208600--Sobic003G352700 Sobic009G063400--Sobic009G125900 Sobic002G075500 Sobic002G075500 Sobic009G063400--Sobic002G075500 Sobic009G063400--Sobic009G026101 Sobic002G118700 Sobic002G118700 Sobic009G063400--Sobic002G118700 Sobic009G063400--Sobic010G096100 Sobic009G063400--Sobic001G334900 Sobic010G090500 Sobic010G090500 Sobic009G063400--Sobic010G090500 Sobic009G063400--Sobic001G208600 Sobic009G063400--Sobic006G075000 Sobic001G133900 Sobic001G133900 Sobic009G026101--Sobic001G133900 Sobic009G026101--Sobic009G063400 Sobic009G026101--Sobic009G125900 Sobic009G246700 Sobic009G246700 Sobic009G026101--Sobic009G246700 Sobic009G206500 Sobic009G206500 Sobic009G026101--Sobic009G206500 Sobic009G026101--Sobic002G075500 Sobic009G026101--Sobic006G075000 Sobic003G254700 Sobic003G254700 Sobic009G026101--Sobic003G254700 Sobic009G026101--Sobic010G096100 Sobic009G125900--Sobic009G063400 Sobic009G125900--Sobic009G026101 Sobic009G125900--Sobic002G075500 Sobic009G125900--Sobic002G118700 Sobic009G125900--Sobic010G090500 Sobic004G265600 Sobic004G265600 Sobic009G125900--Sobic004G265600 Sobic009G125900--Sobic010G096100 Sobic004G051300 Sobic004G051300 Sobic009G125900--Sobic004G051300 Sobic009G125900--Sobic003G254700 Sobic009G017500--Sobic001G208600 Sobic001G263900 Sobic001G263900 Sobic009G017500--Sobic001G263900 Sobic009G221900 Sobic009G221900 Sobic009G017500--Sobic009G221900 Sobic009G017500--Sobic002G030800 Sobic008G072600 Sobic008G072600 Sobic009G017500--Sobic008G072600 Sobic009G017500--Sobic010G096100 Sobic009G017500--Sobic006G075000 Sobic009G017500--Sobic003G099166 Sobic003G238600 Sobic003G238600 Sobic009G017500--Sobic003G238600 Sobic004G296300 Sobic004G296300 Sobic009G251100--Sobic004G296300 Sobic010G120300 Sobic010G120300 Sobic009G251100--Sobic010G120300 Sobic009G251100--Sobic010G096100 Sobic003G419600 Sobic003G419600 Sobic009G251100--Sobic003G419600 Sobic001G196000 Sobic001G196000 Sobic009G251100--Sobic001G196000 Sobic001G073150 Sobic001G073150 Sobic009G251100--Sobic001G073150 Sobic004G243800 Sobic004G243800 Sobic009G251100--Sobic004G243800 Sobic001G437500 Sobic001G437500 Sobic009G251100--Sobic001G437500 Sobic009G251100--Sobic009G063400 Sobic005G052500 Sobic005G052500 Sobic001G484000--Sobic005G052500 Sobic001G046800 Sobic001G046800 Sobic001G484000--Sobic001G046800 Sobic001G484000--Sobic003G352700 Sobic001G484000--Sobic002G053900 Sobic003G269100 Sobic003G269100 Sobic001G484000--Sobic003G269100 Sobic003G082700 Sobic003G082700 Sobic001G484000--Sobic003G082700 Sobic002G094600 Sobic002G094600 Sobic001G484000--Sobic002G094600 Sobic009G008800 Sobic009G008800 Sobic001G484000--Sobic009G008800 Sobic001G484000--Sobic003G239100 Sobic010G114000--Sobic010G096100 Sobic010G114000--Sobic006G075000 Sobic002G271300 Sobic002G271300 Sobic010G114000--Sobic002G271300 Sobic010G131400 Sobic010G131400 Sobic010G114000--Sobic010G131400 Sobic002G254900 Sobic002G254900 Sobic010G114000--Sobic002G254900 Sobic002G111500 Sobic002G111500 Sobic010G114000--Sobic002G111500 Sobic010G180100 Sobic010G180100 Sobic010G114000--Sobic010G180100 Sobic010G042600 Sobic010G042600 Sobic010G114000--Sobic010G042600 Sobic004G165300 Sobic004G165300 Sobic010G114000--Sobic004G165300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.