Gene annotation
Transcriptome id Sobic.008G179800.1
Synonym GATA4, Sb08g022276
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
GATA zinc finger domain containing protein, expressed
UniProt A0A1B6PEF8
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF161
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G60530 : GATA transcription factor 4
RAP-DB (Rice) LOC_Os12g42970.1 : GATA zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a004772
Brachypodium -
Barley HORVU5Hr1G005990.2 , HORVU5Hr1G005990.1 , HORVU5Hr1G005990.6 , HORVU5Hr1G005990.7 , HORVU5Hr1G005990.4 , HORVU5Hr1G005990.5 , HORVU5Hr1G005990.3 , HORVU5Hr1G005990.8
Wheat TraesCS5B02G018600 , TraesCS5D02G027700 , TraesCS5A02G022100
Populus -


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cDNA sequences
Sobic.008G179800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G207400 protein kinase domain containing protein, expressed -
2 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
3 Sobic.004G250600 NHL repeat-containing protein, putative, expressed -
4 Sobic.010G118200 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
5 Sobic.007G023600 ATP binding protein, putative, expressed -
6 Sobic.001G170500 expressed protein -
7 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP
8 Sobic.009G253800 aspartic proteinase, putative, expressed -
9 Sobic.004G038900 expressed protein -
10 Sobic.003G412200 inducer of CBF expression 2, putative, expressed -
11 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
12 Sobic.001G425900 EDM2, putative, expressed -
13 Sobic.002G247300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor, putative, expressed K14431: transcription factor TGA
14 Sobic.003G304500 expressed protein -
15 Sobic.009G144500 expressed protein -
16 Sobic.003G217500 expressed protein -
17 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
18 Sobic.006G261200 Trihelix Family(PubMedID : 24864043)@GL4(Ortholog in rice:Wu et al. (2017) )(PubMedID : 31659902)@transcription factor, putative, expressed -
19 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
20 Sobic.009G025100 transporter, putative, expressed -


Gene co-expression network
sample Sobic008G179800 Sobic008G179800 Sobic010G207400 Sobic010G207400 Sobic008G179800--Sobic010G207400 Sobic004G196800 Sobic004G196800 Sobic008G179800--Sobic004G196800 Sobic004G250600 Sobic004G250600 Sobic008G179800--Sobic004G250600 Sobic010G118200 Sobic010G118200 Sobic008G179800--Sobic010G118200 Sobic007G023600 Sobic007G023600 Sobic008G179800--Sobic007G023600 Sobic001G170500 Sobic001G170500 Sobic008G179800--Sobic001G170500 Sobic008G156200 Sobic008G156200 Sobic008G179800--Sobic008G156200 Sobic009G253800 Sobic009G253800 Sobic008G179800--Sobic009G253800 Sobic004G038900 Sobic004G038900 Sobic008G179800--Sobic004G038900 Sobic005G171800 Sobic005G171800 Sobic010G207400--Sobic005G171800 Sobic004G294100 Sobic004G294100 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic003G230500 Sobic003G230500 Sobic010G207400--Sobic003G230500 Sobic010G227400 Sobic010G227400 Sobic010G207400--Sobic010G227400 Sobic010G168500 Sobic010G168500 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600 Sobic004G196800--Sobic009G025100 Sobic004G210000 Sobic004G210000 Sobic004G196800--Sobic004G210000 Sobic006G015800 Sobic006G015800 Sobic004G196800--Sobic006G015800 Sobic004G196800--Sobic010G207400 Sobic010G047300 Sobic010G047300 Sobic004G196800--Sobic010G047300 Sobic005G077900 Sobic005G077900 Sobic004G196800--Sobic005G077900 Sobic002G293100 Sobic002G293100 Sobic004G196800--Sobic002G293100 Sobic004G196800--Sobic004G038900 Sobic009G033500 Sobic009G033500 Sobic004G196800--Sobic009G033500 Sobic004G250600--Sobic007G023600 Sobic006G261200 Sobic006G261200 Sobic004G250600--Sobic006G261200 Sobic003G217500 Sobic003G217500 Sobic004G250600--Sobic003G217500 Sobic004G250600--Sobic001G170500 Sobic003G304500 Sobic003G304500 Sobic004G250600--Sobic003G304500 Sobic006G186300 Sobic006G186300 Sobic004G250600--Sobic006G186300 Sobic004G250600--Sobic008G179800 Sobic004G250600--Sobic010G207400 Sobic004G250600--Sobic009G025100 Sobic007G091200 Sobic007G091200 Sobic010G118200--Sobic007G091200 Sobic006G104800 Sobic006G104800 Sobic010G118200--Sobic006G104800 Sobic010G118200--Sobic004G294100 Sobic001G425900 Sobic001G425900 Sobic010G118200--Sobic001G425900 Sobic008G071900 Sobic008G071900 Sobic010G118200--Sobic008G071900 Sobic001G142600 Sobic001G142600 Sobic010G118200--Sobic001G142600 Sobic009G168300 Sobic009G168300 Sobic010G118200--Sobic009G168300 Sobic010G102900 Sobic010G102900 Sobic010G118200--Sobic010G102900 Sobic010G118200--Sobic001G170500 Sobic007G023600--Sobic009G253800 Sobic007G023600--Sobic006G261200 Sobic003G402100 Sobic003G402100 Sobic007G023600--Sobic003G402100 Sobic004G190200 Sobic004G190200 Sobic007G023600--Sobic004G190200 Sobic007G023600--Sobic010G118200 Sobic007G023600--Sobic001G170500 Sobic007G023600--Sobic007G091200 Sobic007G023600--Sobic004G250600 Sobic004G294500 Sobic004G294500 Sobic007G023600--Sobic004G294500 Sobic001G170500--Sobic009G025100 Sobic009G007500 Sobic009G007500 Sobic001G170500--Sobic009G007500 Sobic008G088450 Sobic008G088450 Sobic001G170500--Sobic008G088450 Sobic001G170500--Sobic010G118200 Sobic001G170500--Sobic009G253800 Sobic009G227000 Sobic009G227000 Sobic001G170500--Sobic009G227000 Sobic001G170500--Sobic004G294500 Sobic003G024700 Sobic003G024700 Sobic001G170500--Sobic003G024700 Sobic001G518700 Sobic001G518700 Sobic001G170500--Sobic001G518700 Sobic008G156200--Sobic010G207400 Sobic002G247300 Sobic002G247300 Sobic008G156200--Sobic002G247300 Sobic003G035500 Sobic003G035500 Sobic008G156200--Sobic003G035500 Sobic004G075700 Sobic004G075700 Sobic008G156200--Sobic004G075700 Sobic005G131800 Sobic005G131800 Sobic008G156200--Sobic005G131800 Sobic003G412200 Sobic003G412200 Sobic008G156200--Sobic003G412200 Sobic010G112700 Sobic010G112700 Sobic008G156200--Sobic010G112700 Sobic002G016900 Sobic002G016900 Sobic008G156200--Sobic002G016900 Sobic008G156200--Sobic004G038900 Sobic009G253800--Sobic004G294500 Sobic009G253800--Sobic004G190200 Sobic009G253800--Sobic009G007500 Sobic009G253800--Sobic007G091200 Sobic009G253800--Sobic001G518700 Sobic002G141450 Sobic002G141450 Sobic009G253800--Sobic002G141450 Sobic009G253800--Sobic001G170500 Sobic009G253800--Sobic008G088450 Sobic009G253800--Sobic007G023600 Sobic004G038900--Sobic005G171800 Sobic007G128400 Sobic007G128400 Sobic004G038900--Sobic007G128400 Sobic004G038900--Sobic010G207400 Sobic003G207100 Sobic003G207100 Sobic004G038900--Sobic003G207100 Sobic003G091500 Sobic003G091500 Sobic004G038900--Sobic003G091500 Sobic002G007700 Sobic002G007700 Sobic004G038900--Sobic002G007700 Sobic005G174500 Sobic005G174500 Sobic004G038900--Sobic005G174500 Sobic004G038900--Sobic010G047300 Sobic008G184100 Sobic008G184100 Sobic004G038900--Sobic008G184100
Octagon: transcription factors


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