Gene annotation
Transcriptome id Sobic.003G217500.1
Synonym Sb03g027640
Functional annotation expressed protein
UniProt C5XQZ0
Pfam -
Panther DB PTHR13723 PTHR13723:SF175
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g42510.1 : expressed protein
MaizeGDB (Corn) Zm00025a028692
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G217500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G250600 NHL repeat-containing protein, putative, expressed -
2 Sobic.006G200901 - -
3 Sobic.004G014100 sialyltransferase family domain containing protein, expressed -
4 Sobic.002G343000 expressed protein -
5 Sobic.009G148000 anthranilate phosphoribosyltransferase, putative, expressed -
6 Sobic.006G140300 expressed protein -
7 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
8 Sobic.003G304500 expressed protein -
9 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
10 Sobic.004G318400 MTD1, putative, expressed -
11 Sobic.003G153500 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.004G210000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ACT domain containing protein, expressed K01653: E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
13 Sobic.002G253900 growth regulator related protein, putative, expressed -
14 Sobic.003G240100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.008G179800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GATA zinc finger domain containing protein, expressed -
16 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
17 Sobic.003G430100 Phosphoesterase family protein(PubMedID : 24906815)@phosphoesterase family protein, putative, expressed K01114: phospholipase C
18 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
19 Sobic.007G023600 ATP binding protein, putative, expressed -
20 Sobic.002G356800 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic003G217500 Sobic003G217500 Sobic004G250600 Sobic004G250600 Sobic003G217500--Sobic004G250600 Sobic006G200901 Sobic006G200901 Sobic003G217500--Sobic006G200901 Sobic004G014100 Sobic004G014100 Sobic003G217500--Sobic004G014100 Sobic002G343000 Sobic002G343000 Sobic003G217500--Sobic002G343000 Sobic009G148000 Sobic009G148000 Sobic003G217500--Sobic009G148000 Sobic006G140300 Sobic006G140300 Sobic003G217500--Sobic006G140300 Sobic004G196800 Sobic004G196800 Sobic003G217500--Sobic004G196800 Sobic003G304500 Sobic003G304500 Sobic003G217500--Sobic003G304500 Sobic006G186300 Sobic006G186300 Sobic003G217500--Sobic006G186300 Sobic007G023600 Sobic007G023600 Sobic004G250600--Sobic007G023600 Sobic006G261200 Sobic006G261200 Sobic004G250600--Sobic006G261200 Sobic004G250600--Sobic003G217500 Sobic001G170500 Sobic001G170500 Sobic004G250600--Sobic001G170500 Sobic004G250600--Sobic003G304500 Sobic004G250600--Sobic006G186300 Sobic008G179800 Sobic008G179800 Sobic004G250600--Sobic008G179800 Sobic010G207400 Sobic010G207400 Sobic004G250600--Sobic010G207400 Sobic009G025100 Sobic009G025100 Sobic004G250600--Sobic009G025100 Sobic006G200901--Sobic002G343000 Sobic006G143300 Sobic006G143300 Sobic006G200901--Sobic006G143300 Sobic006G200901--Sobic004G014100 Sobic006G200901--Sobic009G148000 Sobic002G253900 Sobic002G253900 Sobic006G200901--Sobic002G253900 Sobic006G200901--Sobic003G217500 Sobic006G200901--Sobic006G186300 Sobic002G230400 Sobic002G230400 Sobic006G200901--Sobic002G230400 Sobic004G075700 Sobic004G075700 Sobic006G200901--Sobic004G075700 Sobic004G014100--Sobic002G343000 Sobic004G014100--Sobic006G200901 Sobic005G160200 Sobic005G160200 Sobic004G014100--Sobic005G160200 Sobic004G014100--Sobic006G143300 Sobic003G343200 Sobic003G343200 Sobic004G014100--Sobic003G343200 Sobic002G349000 Sobic002G349000 Sobic004G014100--Sobic002G349000 Sobic004G014100--Sobic002G230400 Sobic002G354800 Sobic002G354800 Sobic004G014100--Sobic002G354800 Sobic004G014100--Sobic006G140300 Sobic002G343000--Sobic009G148000 Sobic002G343000--Sobic006G200901 Sobic002G343000--Sobic004G014100 Sobic002G343000--Sobic006G143300 Sobic002G343000--Sobic002G253900 Sobic002G343000--Sobic003G217500 Sobic002G343000--Sobic002G230400 Sobic008G041900 Sobic008G041900 Sobic002G343000--Sobic008G041900 Sobic002G343000--Sobic006G186300 Sobic009G148000--Sobic002G343000 Sobic009G148000--Sobic002G253900 Sobic009G148000--Sobic006G200901 Sobic009G148000--Sobic006G186300 Sobic009G148000--Sobic003G217500 Sobic001G005800 Sobic001G005800 Sobic009G148000--Sobic001G005800 Sobic009G148000--Sobic004G014100 Sobic009G148000--Sobic008G041900 Sobic009G148000--Sobic004G250600 Sobic006G140300--Sobic004G014100 Sobic009G254000 Sobic009G254000 Sobic006G140300--Sobic009G254000 Sobic010G180200 Sobic010G180200 Sobic006G140300--Sobic010G180200 Sobic006G140300--Sobic003G217500 Sobic006G140300--Sobic007G023600 Sobic006G066400 Sobic006G066400 Sobic006G140300--Sobic006G066400 Sobic006G140300--Sobic006G200901 Sobic001G423300 Sobic001G423300 Sobic006G140300--Sobic001G423300 Sobic006G140300--Sobic004G250600 Sobic004G196800--Sobic009G025100 Sobic004G210000 Sobic004G210000 Sobic004G196800--Sobic004G210000 Sobic006G015800 Sobic006G015800 Sobic004G196800--Sobic006G015800 Sobic004G196800--Sobic010G207400 Sobic010G047300 Sobic010G047300 Sobic004G196800--Sobic010G047300 Sobic005G077900 Sobic005G077900 Sobic004G196800--Sobic005G077900 Sobic002G293100 Sobic002G293100 Sobic004G196800--Sobic002G293100 Sobic004G038900 Sobic004G038900 Sobic004G196800--Sobic004G038900 Sobic009G033500 Sobic009G033500 Sobic004G196800--Sobic009G033500 Sobic003G304500--Sobic009G025100 Sobic003G304500--Sobic009G033500 Sobic003G304500--Sobic001G170500 Sobic004G274500 Sobic004G274500 Sobic003G304500--Sobic004G274500 Sobic003G304500--Sobic004G196800 Sobic004G155300 Sobic004G155300 Sobic003G304500--Sobic004G155300 Sobic004G318400 Sobic004G318400 Sobic003G304500--Sobic004G318400 Sobic010G037200 Sobic010G037200 Sobic003G304500--Sobic010G037200 Sobic007G091200 Sobic007G091200 Sobic003G304500--Sobic007G091200 Sobic006G186300--Sobic010G047300 Sobic007G041200 Sobic007G041200 Sobic006G186300--Sobic007G041200 Sobic002G122000 Sobic002G122000 Sobic006G186300--Sobic002G122000 Sobic006G186300--Sobic004G075700 Sobic006G186300--Sobic002G230400 Sobic010G084800 Sobic010G084800 Sobic006G186300--Sobic010G084800 Sobic001G305100 Sobic001G305100 Sobic006G186300--Sobic001G305100 Sobic005G131800 Sobic005G131800 Sobic006G186300--Sobic005G131800 Sobic005G171800 Sobic005G171800 Sobic006G186300--Sobic005G171800
Octagon: transcription factors


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