Gene annotation
Transcriptome id Sobic.008G038600.1
Synonym Sb08g003330
Functional annotation pyridoxal-dependent decarboxylase protein, putative, expressed
UniProt C5YS29
Pfam PF01168 PF00278
Panther DB PTHR11482 PTHR11482:SF5
NCBI CDD KOG0622; Ornithine decarboxylase
KEGG Orthology K01586; diaminopimelate decarboxylase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT5G11880 : Pyridoxal-dependent decarboxylase family protein
RAP-DB (Rice) LOC_Os02g24354.1 : pyridoxal-dependent decarboxylase protein, putative, expressed
MaizeGDB (Corn) Zm00025a053902 , Zm00025a029049
Brachypodium KQJ94542
Barley HORVU6Hr1G022220.1 , HORVU6Hr1G022220.2 , HORVU6Hr1G022220.3 , HORVU6Hr1G022170.4 , HORVU6Hr1G022170.5 , HORVU6Hr1G022170.6 , HORVU6Hr1G022170.7 , HORVU6Hr1G022170.1 , HORVU6Hr1G022170.2 , HORVU6Hr1G022170.3 , HORVU6Hr1G022170.8
Wheat TraesCS6B02G150600 , TraesCS6D02G112400 , TraesCS6A02G122300
Populus -


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cDNA sequences
Sobic.008G038600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G317100 PPR repeat containing protein, expressed -
2 Sobic.006G128400 PPR repeat containing protein, expressed -
3 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
4 Sobic.007G132200 DNA-repair protein complementing XP-C cells, putative, expressed K10838: xeroderma pigmentosum group C-complementing protein
5 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
6 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
7 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
8 Sobic.002G092050 - -
9 Sobic.003G399100 pentatricopeptide, putative, expressed -
10 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
11 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
12 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
13 Sobic.004G171200 WD domain, G-beta repeat domain containing protein, expressed K13124: mitogen-activated protein kinase organizer 1
14 Sobic.009G005400 ABC transporter, ATP-binding protein, putative, expressed -
15 Sobic.006G036100 expressed protein K11266: MAternally affected uncoordination
16 Sobic.001G025800 pentatricopeptide, putative, expressed -
17 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
18 Sobic.004G019500 pentatricopeptide, putative, expressed -
19 Sobic.003G345900 histone deacetylase, putative, expressed -
20 Sobic.001G401700 aminotransferase, classes I and II, domain containing protein, expressed K10206: LL-diaminopimelate aminotransferase


Gene co-expression network
sample Sobic008G038600 Sobic008G038600 Sobic002G317100 Sobic002G317100 Sobic008G038600--Sobic002G317100 Sobic006G128400 Sobic006G128400 Sobic008G038600--Sobic006G128400 Sobic002G191100 Sobic002G191100 Sobic008G038600--Sobic002G191100 Sobic007G132200 Sobic007G132200 Sobic008G038600--Sobic007G132200 Sobic001G153300 Sobic001G153300 Sobic008G038600--Sobic001G153300 Sobic006G193300 Sobic006G193300 Sobic008G038600--Sobic006G193300 Sobic004G003900 Sobic004G003900 Sobic008G038600--Sobic004G003900 Sobic002G092050 Sobic002G092050 Sobic008G038600--Sobic002G092050 Sobic003G399100 Sobic003G399100 Sobic008G038600--Sobic003G399100 Sobic002G317100--Sobic008G038600 Sobic002G317100--Sobic006G128400 Sobic001G393900 Sobic001G393900 Sobic002G317100--Sobic001G393900 Sobic002G155000 Sobic002G155000 Sobic002G317100--Sobic002G155000 Sobic003G308500 Sobic003G308500 Sobic002G317100--Sobic003G308500 Sobic010G115400 Sobic010G115400 Sobic002G317100--Sobic010G115400 Sobic002G317100--Sobic006G193300 Sobic006G269800 Sobic006G269800 Sobic002G317100--Sobic006G269800 Sobic001G178300 Sobic001G178300 Sobic002G317100--Sobic001G178300 Sobic002G378100 Sobic002G378100 Sobic006G128400--Sobic002G378100 Sobic001G501400 Sobic001G501400 Sobic006G128400--Sobic001G501400 Sobic006G128400--Sobic002G092050 Sobic001G224200 Sobic001G224200 Sobic006G128400--Sobic001G224200 Sobic008G165900 Sobic008G165900 Sobic006G128400--Sobic008G165900 Sobic007G075800 Sobic007G075800 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic010G224700 Sobic010G224700 Sobic006G128400--Sobic010G224700 Sobic006G128400--Sobic002G317100 Sobic001G114400 Sobic001G114400 Sobic002G191100--Sobic001G114400 Sobic002G181132 Sobic002G181132 Sobic002G191100--Sobic002G181132 Sobic003G162800 Sobic003G162800 Sobic002G191100--Sobic003G162800 Sobic002G191100--Sobic008G038600 Sobic003G039300 Sobic003G039300 Sobic002G191100--Sobic003G039300 Sobic003G345900 Sobic003G345900 Sobic002G191100--Sobic003G345900 Sobic007G137800 Sobic007G137800 Sobic002G191100--Sobic007G137800 Sobic009G214200 Sobic009G214200 Sobic002G191100--Sobic009G214200 Sobic004G070200 Sobic004G070200 Sobic002G191100--Sobic004G070200 Sobic007G132200--Sobic008G038600 Sobic007G132200--Sobic002G155000 Sobic001G290600 Sobic001G290600 Sobic007G132200--Sobic001G290600 Sobic001G283300 Sobic001G283300 Sobic007G132200--Sobic001G283300 Sobic010G260000 Sobic010G260000 Sobic007G132200--Sobic010G260000 Sobic001G025800 Sobic001G025800 Sobic007G132200--Sobic001G025800 Sobic007G132200--Sobic003G399100 Sobic010G204900 Sobic010G204900 Sobic007G132200--Sobic010G204900 Sobic006G049900 Sobic006G049900 Sobic007G132200--Sobic006G049900 Sobic001G153300--Sobic008G038600 Sobic001G153300--Sobic006G269800 Sobic001G153300--Sobic010G204900 Sobic001G153300--Sobic002G155000 Sobic007G030800 Sobic007G030800 Sobic001G153300--Sobic007G030800 Sobic001G153300--Sobic001G025800 Sobic004G344000 Sobic004G344000 Sobic001G153300--Sobic004G344000 Sobic006G258300 Sobic006G258300 Sobic001G153300--Sobic006G258300 Sobic002G109600 Sobic002G109600 Sobic001G153300--Sobic002G109600 Sobic004G340400 Sobic004G340400 Sobic006G193300--Sobic004G340400 Sobic001G429600 Sobic001G429600 Sobic006G193300--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic006G193300--Sobic001G461300 Sobic002G408900 Sobic002G408900 Sobic006G193300--Sobic002G408900 Sobic008G049100 Sobic008G049100 Sobic006G193300--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic006G193300--Sobic009G246500 Sobic006G125900 Sobic006G125900 Sobic006G193300--Sobic006G125900 Sobic001G401500 Sobic001G401500 Sobic006G193300--Sobic001G401500 Sobic003G199300 Sobic003G199300 Sobic006G193300--Sobic003G199300 Sobic001G375000 Sobic001G375000 Sobic004G003900--Sobic001G375000 Sobic008G090900 Sobic008G090900 Sobic004G003900--Sobic008G090900 Sobic003G128400 Sobic003G128400 Sobic004G003900--Sobic003G128400 Sobic009G092900 Sobic009G092900 Sobic004G003900--Sobic009G092900 Sobic004G003900--Sobic002G181132 Sobic003G045300 Sobic003G045300 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic002G092050--Sobic002G378100 Sobic002G092050--Sobic006G128400 Sobic002G092050--Sobic006G193300 Sobic002G092050--Sobic008G038600 Sobic004G171200 Sobic004G171200 Sobic002G092050--Sobic004G171200 Sobic002G092050--Sobic006G125900 Sobic007G097400 Sobic007G097400 Sobic002G092050--Sobic007G097400 Sobic002G092050--Sobic001G501400 Sobic002G238000 Sobic002G238000 Sobic002G092050--Sobic002G238000 Sobic003G399100--Sobic008G038600 Sobic004G354000 Sobic004G354000 Sobic003G399100--Sobic004G354000 Sobic009G005400 Sobic009G005400 Sobic003G399100--Sobic009G005400 Sobic002G305100 Sobic002G305100 Sobic003G399100--Sobic002G305100 Sobic003G399100--Sobic007G132200 Sobic003G267500 Sobic003G267500 Sobic003G399100--Sobic003G267500 Sobic003G399100--Sobic006G128400 Sobic008G017100 Sobic008G017100 Sobic003G399100--Sobic008G017100 Sobic003G399100--Sobic010G224700
Octagon: transcription factors


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