Gene annotation
Transcriptome id Sobic.006G128400.2,Sobic.006G128400.4,Sobic.006G128400.3,Sobic.006G128400.1,Sobic.006G128400.5
Synonym Sb06g020845
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1Z5RE22 , A0A1Z5RDN1 , A0A1Z5RDQ8 , A0A1Z5REL4
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF430
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G06710 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g41140.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ83276
Barley HORVU2Hr1G084600.25 , HORVU2Hr1G084600.24 , HORVU2Hr1G084600.27 , HORVU2Hr1G084600.26 , HORVU2Hr1G084600.21 , HORVU2Hr1G084600.20 , HORVU2Hr1G084600.23 , HORVU2Hr1G084600.22 , HORVU2Hr1G084600.2 , HORVU2Hr1G084600.3 , HORVU2Hr1G084600.1 , HORVU2Hr1G084600.7 , HORVU2Hr1G084600.8 , HORVU2Hr1G084600.9 , HORVU2Hr1G084600.15 , HORVU2Hr1G084600.17 , HORVU2Hr1G084600.18 , HORVU2Hr1G084600.19 , HORVU2Hr1G084600.10 , HORVU2Hr1G084600.11 , HORVU2Hr1G084600.12 , HORVU2Hr1G084600.13 , HORVU2Hr1G084600.14 , HORVU2Hr1G084600.16
Wheat TraesCS2D02G345800 , TraesCS2B02G365705 , TraesCS2A02G347200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
2 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
3 Sobic.002G092050 - -
4 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
5 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
6 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
7 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
8 Sobic.010G224700 - K17680: twinkle protein
9 Sobic.002G317100 PPR repeat containing protein, expressed -
10 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
11 Sobic.007G056200 HEAT repeat family protein, putative, expressed -
12 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
13 Sobic.002G155000 EMB1381, putative, expressed -
14 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
15 Sobic.004G030800 expressed protein -
16 Sobic.001G429600 HEAT repeat family protein, putative, expressed -
17 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
18 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
19 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
20 Sobic.007G201700 mTERF domain containing protein, expressed -


Gene co-expression network
sample Sobic006G128400 Sobic006G128400 Sobic002G378100 Sobic002G378100 Sobic006G128400--Sobic002G378100 Sobic001G501400 Sobic001G501400 Sobic006G128400--Sobic001G501400 Sobic002G092050 Sobic002G092050 Sobic006G128400--Sobic002G092050 Sobic001G224200 Sobic001G224200 Sobic006G128400--Sobic001G224200 Sobic008G165900 Sobic008G165900 Sobic006G128400--Sobic008G165900 Sobic007G075800 Sobic007G075800 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic010G224700 Sobic010G224700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic001G358600 Sobic001G358600 Sobic001G501400--Sobic001G358600 Sobic001G501400--Sobic006G128400 Sobic003G156500 Sobic003G156500 Sobic001G501400--Sobic003G156500 Sobic001G173800 Sobic001G173800 Sobic001G501400--Sobic001G173800 Sobic006G125900 Sobic006G125900 Sobic001G501400--Sobic006G125900 Sobic008G049100 Sobic008G049100 Sobic001G501400--Sobic008G049100 Sobic010G003400 Sobic010G003400 Sobic001G501400--Sobic010G003400 Sobic001G501400--Sobic002G378100 Sobic006G193300 Sobic006G193300 Sobic001G501400--Sobic006G193300 Sobic002G092050--Sobic002G378100 Sobic002G092050--Sobic006G128400 Sobic002G092050--Sobic006G193300 Sobic008G038600 Sobic008G038600 Sobic002G092050--Sobic008G038600 Sobic004G171200 Sobic004G171200 Sobic002G092050--Sobic004G171200 Sobic002G092050--Sobic006G125900 Sobic007G097400 Sobic007G097400 Sobic002G092050--Sobic007G097400 Sobic002G092050--Sobic001G501400 Sobic002G238000 Sobic002G238000 Sobic002G092050--Sobic002G238000 Sobic001G224200--Sobic008G165900 Sobic001G224200--Sobic006G128400 Sobic001G207200 Sobic001G207200 Sobic001G224200--Sobic001G207200 Sobic001G224200--Sobic007G075800 Sobic001G224200--Sobic002G238000 Sobic001G119600 Sobic001G119600 Sobic001G224200--Sobic001G119600 Sobic003G332900 Sobic003G332900 Sobic001G224200--Sobic003G332900 Sobic001G224200--Sobic001G501400 Sobic004G030800 Sobic004G030800 Sobic001G224200--Sobic004G030800 Sobic008G165900--Sobic001G224200 Sobic008G165900--Sobic003G332900 Sobic008G165900--Sobic002G238000 Sobic008G165900--Sobic006G128400 Sobic008G165900--Sobic007G075800 Sobic008G165900--Sobic001G207200 Sobic010G100800 Sobic010G100800 Sobic008G165900--Sobic010G100800 Sobic001G501300 Sobic001G501300 Sobic008G165900--Sobic001G501300 Sobic002G031700 Sobic002G031700 Sobic008G165900--Sobic002G031700 Sobic007G075800--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic007G075800--Sobic002G155000 Sobic004G025800 Sobic004G025800 Sobic007G075800--Sobic004G025800 Sobic007G075800--Sobic004G030800 Sobic007G075800--Sobic008G165900 Sobic007G075800--Sobic006G128400 Sobic008G051200 Sobic008G051200 Sobic007G075800--Sobic008G051200 Sobic006G049900 Sobic006G049900 Sobic007G075800--Sobic006G049900 Sobic002G318800 Sobic002G318800 Sobic007G075800--Sobic002G318800 Sobic003G033100 Sobic003G033100 Sobic010G051700--Sobic003G033100 Sobic010G051700--Sobic004G025800 Sobic010G051700--Sobic006G128400 Sobic003G434700 Sobic003G434700 Sobic010G051700--Sobic003G434700 Sobic010G115400 Sobic010G115400 Sobic010G051700--Sobic010G115400 Sobic001G172700 Sobic001G172700 Sobic010G051700--Sobic001G172700 Sobic003G032700 Sobic003G032700 Sobic010G051700--Sobic003G032700 Sobic003G171500 Sobic003G171500 Sobic010G051700--Sobic003G171500 Sobic004G019200 Sobic004G019200 Sobic010G051700--Sobic004G019200 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic001G049800 Sobic001G049800 Sobic010G224700--Sobic001G049800 Sobic003G425100 Sobic003G425100 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic002G317100--Sobic008G038600 Sobic002G317100--Sobic006G128400 Sobic001G393900 Sobic001G393900 Sobic002G317100--Sobic001G393900 Sobic002G317100--Sobic002G155000 Sobic003G308500 Sobic003G308500 Sobic002G317100--Sobic003G308500 Sobic002G317100--Sobic010G115400 Sobic002G317100--Sobic006G193300 Sobic006G269800 Sobic006G269800 Sobic002G317100--Sobic006G269800 Sobic001G178300 Sobic001G178300 Sobic002G317100--Sobic001G178300
Octagon: transcription factors


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