Gene annotation
Transcriptome id Sobic.002G092050.1
Synonym -
Functional annotation -
UniProt A0A1W0W340
Pfam PF01535 PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF555
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G06920 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g14530.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a045513 , Zm00025a017139
Brachypodium KQK20246 , KQK20248
Barley HORVU3Hr1G036190.3 , HORVU3Hr1G036190.2 , HORVU3Hr1G036190.1
Wheat -
Populus PNT14153 , PNT14152


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
2 Sobic.006G128400 PPR repeat containing protein, expressed -
3 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
4 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
5 Sobic.004G171200 WD domain, G-beta repeat domain containing protein, expressed K13124: mitogen-activated protein kinase organizer 1
6 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
7 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
8 Sobic.001G501400 WD domain, G-beta repeat domain containing protein, expressed K14556: DIP2, UTP12, U3 small nucleolar RNA-associated protein 12
9 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
10 Sobic.001G466500 PPR repeat containing protein, expressed -
11 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
12 Sobic.003G199300 down-regulated in metastasis family protein, expressed K14772: U3 small nucleolar RNA-associated protein 20
13 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
14 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -
15 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
16 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
17 Sobic.002G317100 PPR repeat containing protein, expressed -
18 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -
19 Sobic.007G106700 NOL1/NOP2/sun family protein, putative, expressed -
20 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27


Gene co-expression network
sample Sobic002G092050 Sobic002G092050 Sobic002G378100 Sobic002G378100 Sobic002G092050--Sobic002G378100 Sobic006G128400 Sobic006G128400 Sobic002G092050--Sobic006G128400 Sobic006G193300 Sobic006G193300 Sobic002G092050--Sobic006G193300 Sobic008G038600 Sobic008G038600 Sobic002G092050--Sobic008G038600 Sobic004G171200 Sobic004G171200 Sobic002G092050--Sobic004G171200 Sobic006G125900 Sobic006G125900 Sobic002G092050--Sobic006G125900 Sobic007G097400 Sobic007G097400 Sobic002G092050--Sobic007G097400 Sobic001G501400 Sobic001G501400 Sobic002G092050--Sobic001G501400 Sobic002G238000 Sobic002G238000 Sobic002G092050--Sobic002G238000 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic010G224700 Sobic010G224700 Sobic002G378100--Sobic010G224700 Sobic010G083900 Sobic010G083900 Sobic002G378100--Sobic010G083900 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic006G128400--Sobic002G378100 Sobic006G128400--Sobic001G501400 Sobic006G128400--Sobic002G092050 Sobic001G224200 Sobic001G224200 Sobic006G128400--Sobic001G224200 Sobic008G165900 Sobic008G165900 Sobic006G128400--Sobic008G165900 Sobic007G075800 Sobic007G075800 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic006G128400--Sobic010G224700 Sobic002G317100 Sobic002G317100 Sobic006G128400--Sobic002G317100 Sobic004G340400 Sobic004G340400 Sobic006G193300--Sobic004G340400 Sobic001G429600 Sobic001G429600 Sobic006G193300--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic006G193300--Sobic001G461300 Sobic002G408900 Sobic002G408900 Sobic006G193300--Sobic002G408900 Sobic008G049100 Sobic008G049100 Sobic006G193300--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic006G193300--Sobic009G246500 Sobic006G193300--Sobic006G125900 Sobic001G401500 Sobic001G401500 Sobic006G193300--Sobic001G401500 Sobic003G199300 Sobic003G199300 Sobic006G193300--Sobic003G199300 Sobic008G038600--Sobic002G317100 Sobic008G038600--Sobic006G128400 Sobic002G191100 Sobic002G191100 Sobic008G038600--Sobic002G191100 Sobic007G132200 Sobic007G132200 Sobic008G038600--Sobic007G132200 Sobic001G153300 Sobic001G153300 Sobic008G038600--Sobic001G153300 Sobic008G038600--Sobic006G193300 Sobic004G003900 Sobic004G003900 Sobic008G038600--Sobic004G003900 Sobic008G038600--Sobic002G092050 Sobic003G399100 Sobic003G399100 Sobic008G038600--Sobic003G399100 Sobic008G051200 Sobic008G051200 Sobic004G171200--Sobic008G051200 Sobic002G298100 Sobic002G298100 Sobic004G171200--Sobic002G298100 Sobic001G434200 Sobic001G434200 Sobic004G171200--Sobic001G434200 Sobic010G059500 Sobic010G059500 Sobic004G171200--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic004G171200--Sobic001G493200 Sobic001G120500 Sobic001G120500 Sobic004G171200--Sobic001G120500 Sobic009G239200 Sobic009G239200 Sobic004G171200--Sobic009G239200 Sobic006G155100 Sobic006G155100 Sobic004G171200--Sobic006G155100 Sobic004G171200--Sobic007G097400 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic001G145400 Sobic001G145400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic006G125900--Sobic001G429600 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic007G097400--Sobic009G213200 Sobic001G276200 Sobic001G276200 Sobic007G097400--Sobic001G276200 Sobic010G100800 Sobic010G100800 Sobic007G097400--Sobic010G100800 Sobic007G097400--Sobic004G171200 Sobic001G450000 Sobic001G450000 Sobic007G097400--Sobic001G450000 Sobic003G209400 Sobic003G209400 Sobic007G097400--Sobic003G209400 Sobic007G097400--Sobic006G128400 Sobic007G097400--Sobic006G125900 Sobic006G137600 Sobic006G137600 Sobic007G097400--Sobic006G137600 Sobic001G358600 Sobic001G358600 Sobic001G501400--Sobic001G358600 Sobic001G501400--Sobic006G128400 Sobic003G156500 Sobic003G156500 Sobic001G501400--Sobic003G156500 Sobic001G173800 Sobic001G173800 Sobic001G501400--Sobic001G173800 Sobic001G501400--Sobic006G125900 Sobic001G501400--Sobic008G049100 Sobic001G501400--Sobic010G003400 Sobic001G501400--Sobic002G378100 Sobic001G501400--Sobic006G193300 Sobic005G100900 Sobic005G100900 Sobic002G238000--Sobic005G100900 Sobic002G238000--Sobic008G165900 Sobic009G071700 Sobic009G071700 Sobic002G238000--Sobic009G071700 Sobic002G238000--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic002G238000--Sobic002G262100 Sobic010G228700 Sobic010G228700 Sobic002G238000--Sobic010G228700 Sobic002G238000--Sobic001G224200 Sobic002G238000--Sobic002G092050 Sobic004G268100 Sobic004G268100 Sobic002G238000--Sobic004G268100
Octagon: transcription factors


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