Gene annotation
Transcriptome id Sobic.009G005400.1
Synonym AtABCD1, ACN2, PED3, CTS, PXA1, Sb09g000670
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt A0A1B6P5N7
Pfam PF00005 PF06472
Panther DB PTHR11384 PTHR11384:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT4G39850 : peroxisomal ABC transporter 1
RAP-DB (Rice) LOC_Os01g73530.2 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a038285 , Zm00025a017606 , Zm00025a025864 , Zm00025a048394
Brachypodium KQK08074 , KQK08073 , KQK11705 , KQK11706
Barley HORVU3Hr1G113060.14 , HORVU3Hr1G113060.12 , HORVU3Hr1G113060.13 , HORVU3Hr1G113060.10 , HORVU3Hr1G113060.11 , HORVU1Hr1G003300.20 , HORVU1Hr1G003300.15 , HORVU1Hr1G003300.14 , HORVU1Hr1G003300.17 , HORVU1Hr1G003300.16 , HORVU1Hr1G003300.11 , HORVU1Hr1G003300.10 , HORVU1Hr1G003300.13 , HORVU1Hr1G003300.12 , HORVU1Hr1G003300.19 , HORVU1Hr1G003300.18 , HORVU3Hr1G113060.4 , HORVU3Hr1G113060.6 , HORVU3Hr1G113060.7 , HORVU3Hr1G113060.2 , HORVU3Hr1G113060.3 , HORVU3Hr1G113060.8 , HORVU3Hr1G113060.9 , HORVU3Hr1G113060.5 , HORVU3Hr1G113060.1 , HORVU1Hr1G003300.1 , HORVU1Hr1G003300.3 , HORVU1Hr1G003300.2 , HORVU1Hr1G003300.5 , HORVU1Hr1G003300.4 , HORVU1Hr1G003300.7 , HORVU1Hr1G003300.6 , HORVU1Hr1G003300.9 , HORVU1Hr1G003300.8
Wheat TraesCS3D02G253800 , TraesCSU02G053600 , TraesCSU02G053600 , TraesCS3A02G516400 , TraesCS3A02G255900 , TraesCS1B02G030800 , TraesCS3D02G524100 , TraesCS3D02G524100 , TraesCS1B02G030800 , TraesCS1D02G024400 , TraesCS1D02G024400 , TraesCS3B02G288600 , TraesCS3B02G288600 , TraesCS3A02G516400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G025800 pentatricopeptide, putative, expressed -
2 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
3 Sobic.003G267500 expressed protein -
4 Sobic.010G204900 formamidopyrimidine-DNA glycosylase, putative, expressed K10563: mutM, formamidopyrimidine-DNA glycosylase
5 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
6 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
7 Sobic.009G105200 PPR repeat containing protein, expressed -
8 Sobic.006G275000 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
9 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
10 Sobic.002G317100 PPR repeat containing protein, expressed -
11 Sobic.004G032100 expressed protein -
12 Sobic.003G399100 pentatricopeptide, putative, expressed -
13 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
14 Sobic.002G305100 mTERF domain containing protein, expressed -
15 Sobic.005G140500 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase
16 Sobic.004G301200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
17 Sobic.005G117300 ABC transporter, ATP-binding protein, putative, expressed -
18 Sobic.007G015300 calreticulin family protein, expressed -
19 Sobic.004G144000 - -
20 Sobic.010G013300 expressed protein -


Gene co-expression network
sample Sobic009G005400 Sobic009G005400 Sobic001G025800 Sobic001G025800 Sobic009G005400--Sobic001G025800 Sobic010G100800 Sobic010G100800 Sobic009G005400--Sobic010G100800 Sobic003G267500 Sobic003G267500 Sobic009G005400--Sobic003G267500 Sobic010G204900 Sobic010G204900 Sobic009G005400--Sobic010G204900 Sobic004G144400 Sobic004G144400 Sobic009G005400--Sobic004G144400 Sobic008G038600 Sobic008G038600 Sobic009G005400--Sobic008G038600 Sobic009G105200 Sobic009G105200 Sobic009G005400--Sobic009G105200 Sobic006G275000 Sobic006G275000 Sobic009G005400--Sobic006G275000 Sobic008G157200 Sobic008G157200 Sobic009G005400--Sobic008G157200 Sobic004G003900 Sobic004G003900 Sobic001G025800--Sobic004G003900 Sobic005G117300 Sobic005G117300 Sobic001G025800--Sobic005G117300 Sobic001G495200 Sobic001G495200 Sobic001G025800--Sobic001G495200 Sobic002G048200 Sobic002G048200 Sobic001G025800--Sobic002G048200 Sobic009G251000 Sobic009G251000 Sobic001G025800--Sobic009G251000 Sobic001G513800 Sobic001G513800 Sobic001G025800--Sobic001G513800 Sobic001G025800--Sobic003G267500 Sobic007G015300 Sobic007G015300 Sobic001G025800--Sobic007G015300 Sobic009G092900 Sobic009G092900 Sobic001G025800--Sobic009G092900 Sobic001G501300 Sobic001G501300 Sobic010G100800--Sobic001G501300 Sobic001G261900 Sobic001G261900 Sobic010G100800--Sobic001G261900 Sobic005G026000 Sobic005G026000 Sobic010G100800--Sobic005G026000 Sobic001G300100 Sobic001G300100 Sobic010G100800--Sobic001G300100 Sobic002G404200 Sobic002G404200 Sobic010G100800--Sobic002G404200 Sobic010G086900 Sobic010G086900 Sobic010G100800--Sobic010G086900 Sobic002G031700 Sobic002G031700 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic003G193200 Sobic003G193200 Sobic010G100800--Sobic003G193200 Sobic003G267500--Sobic001G025800 Sobic003G267500--Sobic005G117300 Sobic003G267500--Sobic010G204900 Sobic006G047300 Sobic006G047300 Sobic003G267500--Sobic006G047300 Sobic004G301200 Sobic004G301200 Sobic003G267500--Sobic004G301200 Sobic003G267500--Sobic009G005400 Sobic002G013700 Sobic002G013700 Sobic003G267500--Sobic002G013700 Sobic010G134500 Sobic010G134500 Sobic003G267500--Sobic010G134500 Sobic007G090537 Sobic007G090537 Sobic003G267500--Sobic007G090537 Sobic001G032200 Sobic001G032200 Sobic010G204900--Sobic001G032200 Sobic010G204900--Sobic001G025800 Sobic010G204900--Sobic003G267500 Sobic010G204900--Sobic010G100800 Sobic003G120300 Sobic003G120300 Sobic010G204900--Sobic003G120300 Sobic004G130300 Sobic004G130300 Sobic010G204900--Sobic004G130300 Sobic001G250700 Sobic001G250700 Sobic010G204900--Sobic001G250700 Sobic010G204900--Sobic004G003900 Sobic010G204900--Sobic005G117300 Sobic004G019500 Sobic004G019500 Sobic004G144400--Sobic004G019500 Sobic008G067100 Sobic008G067100 Sobic004G144400--Sobic008G067100 Sobic008G090900 Sobic008G090900 Sobic004G144400--Sobic008G090900 Sobic004G144400--Sobic004G003900 Sobic002G181132 Sobic002G181132 Sobic004G144400--Sobic002G181132 Sobic004G144400--Sobic004G301200 Sobic004G144400--Sobic009G092900 Sobic002G218500 Sobic002G218500 Sobic004G144400--Sobic002G218500 Sobic009G129100 Sobic009G129100 Sobic004G144400--Sobic009G129100 Sobic002G317100 Sobic002G317100 Sobic008G038600--Sobic002G317100 Sobic006G128400 Sobic006G128400 Sobic008G038600--Sobic006G128400 Sobic002G191100 Sobic002G191100 Sobic008G038600--Sobic002G191100 Sobic007G132200 Sobic007G132200 Sobic008G038600--Sobic007G132200 Sobic001G153300 Sobic001G153300 Sobic008G038600--Sobic001G153300 Sobic006G193300 Sobic006G193300 Sobic008G038600--Sobic006G193300 Sobic008G038600--Sobic004G003900 Sobic002G092050 Sobic002G092050 Sobic008G038600--Sobic002G092050 Sobic003G399100 Sobic003G399100 Sobic008G038600--Sobic003G399100 Sobic010G228700 Sobic010G228700 Sobic009G105200--Sobic010G228700 Sobic001G544500 Sobic001G544500 Sobic009G105200--Sobic001G544500 Sobic007G000300 Sobic007G000300 Sobic009G105200--Sobic007G000300 Sobic009G105200--Sobic009G005400 Sobic009G105200--Sobic006G275000 Sobic002G052400 Sobic002G052400 Sobic009G105200--Sobic002G052400 Sobic007G225000 Sobic007G225000 Sobic009G105200--Sobic007G225000 Sobic009G105200--Sobic010G100800 Sobic009G105200--Sobic001G261900 Sobic006G275000--Sobic009G005400 Sobic006G275000--Sobic009G105200 Sobic001G393900 Sobic001G393900 Sobic006G275000--Sobic001G393900 Sobic008G017100 Sobic008G017100 Sobic006G275000--Sobic008G017100 Sobic005G026400 Sobic005G026400 Sobic006G275000--Sobic005G026400 Sobic004G354000 Sobic004G354000 Sobic006G275000--Sobic004G354000 Sobic006G275000--Sobic007G225000 Sobic010G262100 Sobic010G262100 Sobic006G275000--Sobic010G262100 Sobic010G224700 Sobic010G224700 Sobic006G275000--Sobic010G224700 Sobic006G073200 Sobic006G073200 Sobic008G157200--Sobic006G073200 Sobic006G127600 Sobic006G127600 Sobic008G157200--Sobic006G127600 Sobic004G131300 Sobic004G131300 Sobic008G157200--Sobic004G131300 Sobic009G084900 Sobic009G084900 Sobic008G157200--Sobic009G084900 Sobic003G314700 Sobic003G314700 Sobic008G157200--Sobic003G314700 Sobic007G162100 Sobic007G162100 Sobic008G157200--Sobic007G162100 Sobic003G405500 Sobic003G405500 Sobic008G157200--Sobic003G405500 Sobic001G248100 Sobic001G248100 Sobic008G157200--Sobic001G248100 Sobic001G404600 Sobic001G404600 Sobic008G157200--Sobic001G404600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.