Gene annotation
Transcriptome id Sobic.007G201500.1
Synonym
Functional annotation rabGAP/TBC domain-containing protein, putative, expressed
UniProt A0A1B6PIT2
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF274
NCBI CDD KOG1091; Ypt/Rab-specific GTPase-activating protein GYP6
KEGG Orthology K18469; TBC1 domain family member 5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G29950 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os08g40620.1 : rabGAP/TBC domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a005169
Brachypodium KQJ99020
Barley HORVU7Hr1G052400.4 , HORVU7Hr1G052400.2
Wheat TraesCS7B02G149900 , TraesCS7B02G149900 , TraesCS7D02G252200 , TraesCS7A02G253600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G073500 5-nucleotidase domain-containing protein, putative, expressed -
2 Sobic.006G222600 AT hook motif family protein, expressed -
3 Sobic.010G210500 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
4 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
5 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
6 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
7 Sobic.010G176200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G354600 csAtPR5, putative, expressed -
9 Sobic.008G130000 PPR repeat domain containing protein, putative, expressed -
10 Sobic.010G227800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metal transporter Nramp6, putative, expressed -
11 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
12 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.006G166100 GATA zinc finger domain containing protein, expressed -
14 Sobic.001G355800 methyltransferase, putative, expressed -
15 Sobic.006G087700 T-complex protein 11, putative, expressed -
16 Sobic.003G418100 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
17 Sobic.003G262200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
18 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
19 Sobic.010G099700 peptide transporter PTR2, putative, expressed -
20 Sobic.006G002000 phosphoglycerate mutase, putative, expressed -


Gene co-expression network
sample Sobic007G201500 Sobic007G201500 Sobic001G073500 Sobic001G073500 Sobic007G201500--Sobic001G073500 Sobic006G222600 Sobic006G222600 Sobic007G201500--Sobic006G222600 Sobic010G210500 Sobic010G210500 Sobic007G201500--Sobic010G210500 Sobic001G375100 Sobic001G375100 Sobic007G201500--Sobic001G375100 Sobic010G205100 Sobic010G205100 Sobic007G201500--Sobic010G205100 Sobic002G305000 Sobic002G305000 Sobic007G201500--Sobic002G305000 Sobic010G176200 Sobic010G176200 Sobic007G201500--Sobic010G176200 Sobic003G354600 Sobic003G354600 Sobic007G201500--Sobic003G354600 Sobic008G130000 Sobic008G130000 Sobic007G201500--Sobic008G130000 Sobic001G073500--Sobic007G201500 Sobic009G011600 Sobic009G011600 Sobic001G073500--Sobic009G011600 Sobic003G434900 Sobic003G434900 Sobic001G073500--Sobic003G434900 Sobic005G149200 Sobic005G149200 Sobic001G073500--Sobic005G149200 Sobic006G080800 Sobic006G080800 Sobic001G073500--Sobic006G080800 Sobic006G205100 Sobic006G205100 Sobic001G073500--Sobic006G205100 Sobic006G087700 Sobic006G087700 Sobic001G073500--Sobic006G087700 Sobic001G073500--Sobic001G375100 Sobic001G073500--Sobic010G205100 Sobic006G222600--Sobic007G201500 Sobic002G376600 Sobic002G376600 Sobic006G222600--Sobic002G376600 Sobic004G169000 Sobic004G169000 Sobic006G222600--Sobic004G169000 Sobic003G191700 Sobic003G191700 Sobic006G222600--Sobic003G191700 Sobic006G222600--Sobic005G149200 Sobic010G218000 Sobic010G218000 Sobic006G222600--Sobic010G218000 Sobic006G222600--Sobic010G210500 Sobic002G341000 Sobic002G341000 Sobic006G222600--Sobic002G341000 Sobic004G069000 Sobic004G069000 Sobic006G222600--Sobic004G069000 Sobic002G325300 Sobic002G325300 Sobic010G210500--Sobic002G325300 Sobic010G147100 Sobic010G147100 Sobic010G210500--Sobic010G147100 Sobic003G264100 Sobic003G264100 Sobic010G210500--Sobic003G264100 Sobic009G255700 Sobic009G255700 Sobic010G210500--Sobic009G255700 Sobic010G210500--Sobic003G354600 Sobic003G119600 Sobic003G119600 Sobic010G210500--Sobic003G119600 Sobic010G210500--Sobic007G201500 Sobic007G172200 Sobic007G172200 Sobic010G210500--Sobic007G172200 Sobic001G207000 Sobic001G207000 Sobic010G210500--Sobic001G207000 Sobic003G155100 Sobic003G155100 Sobic001G375100--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G375100--Sobic008G001200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G454500 Sobic001G454500 Sobic001G375100--Sobic001G454500 Sobic010G010700 Sobic010G010700 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic007G198300 Sobic007G198300 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000 Sobic006G064100 Sobic006G064100 Sobic010G205100--Sobic006G064100 Sobic010G085100 Sobic010G085100 Sobic010G205100--Sobic010G085100 Sobic001G531500 Sobic001G531500 Sobic010G205100--Sobic001G531500 Sobic001G073900 Sobic001G073900 Sobic010G205100--Sobic001G073900 Sobic009G038900 Sobic009G038900 Sobic010G205100--Sobic009G038900 Sobic003G036200 Sobic003G036200 Sobic010G205100--Sobic003G036200 Sobic005G101200 Sobic005G101200 Sobic010G205100--Sobic005G101200 Sobic002G404800 Sobic002G404800 Sobic010G205100--Sobic002G404800 Sobic003G332700 Sobic003G332700 Sobic010G205100--Sobic003G332700 Sobic002G359400 Sobic002G359400 Sobic002G305000--Sobic002G359400 Sobic009G201300 Sobic009G201300 Sobic002G305000--Sobic009G201300 Sobic002G305000--Sobic003G354600 Sobic002G305000--Sobic010G147100 Sobic001G355800 Sobic001G355800 Sobic002G305000--Sobic001G355800 Sobic006G175800 Sobic006G175800 Sobic002G305000--Sobic006G175800 Sobic001G303100 Sobic001G303100 Sobic002G305000--Sobic001G303100 Sobic010G074300 Sobic010G074300 Sobic002G305000--Sobic010G074300 Sobic003G220800 Sobic003G220800 Sobic002G305000--Sobic003G220800 Sobic010G176200--Sobic008G130000 Sobic003G313300 Sobic003G313300 Sobic010G176200--Sobic003G313300 Sobic004G347800 Sobic004G347800 Sobic010G176200--Sobic004G347800 Sobic004G356400 Sobic004G356400 Sobic010G176200--Sobic004G356400 Sobic003G229300 Sobic003G229300 Sobic010G176200--Sobic003G229300 Sobic003G160200 Sobic003G160200 Sobic010G176200--Sobic003G160200 Sobic001G017300 Sobic001G017300 Sobic010G176200--Sobic001G017300 Sobic007G123500 Sobic007G123500 Sobic010G176200--Sobic007G123500 Sobic001G333800 Sobic001G333800 Sobic010G176200--Sobic001G333800 Sobic001G136800 Sobic001G136800 Sobic003G354600--Sobic001G136800 Sobic003G354600--Sobic003G119600 Sobic003G354600--Sobic002G305000 Sobic004G054100 Sobic004G054100 Sobic003G354600--Sobic004G054100 Sobic003G354600--Sobic001G355800 Sobic003G354600--Sobic010G210500 Sobic003G354600--Sobic009G201300 Sobic002G181600 Sobic002G181600 Sobic003G354600--Sobic002G181600 Sobic003G354600--Sobic003G220800 Sobic008G130000--Sobic010G176200 Sobic008G130000--Sobic004G356400 Sobic008G130000--Sobic003G160200 Sobic003G021100 Sobic003G021100 Sobic008G130000--Sobic003G021100 Sobic010G275700 Sobic010G275700 Sobic008G130000--Sobic010G275700 Sobic001G303200 Sobic001G303200 Sobic008G130000--Sobic001G303200 Sobic001G168250 Sobic001G168250 Sobic008G130000--Sobic001G168250 Sobic008G130000--Sobic003G229300 Sobic008G130000--Sobic001G333800
Octagon: transcription factors


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