Gene annotation
Transcriptome id Sobic.007G119900.1
Synonym Sb07g019530
Functional annotation signal recognition particle receptor subunit beta, putative, expressed
UniProt C5YKN8
Pfam PF00025
Panther DB PTHR11485
NCBI CDD KOG0090; Signal recognition particle receptor, beta subunit (small G protein superfamily)
KEGG Orthology K12272; SRPRB, signal recognition particle receptor subunit beta
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G05670 : signal recognition particle binding
RAP-DB (Rice) LOC_Os08g41250.2 : signal recognition particle receptor subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a006030 , Zm00025a030986
Brachypodium KQK11611 , PNT68461
Barley HORVU7Hr1G039510.5 , HORVU7Hr1G039510.4 , HORVU7Hr1G039510.3 , HORVU7Hr1G039510.1 , HORVU7Hr1G052720.3 , HORVU7Hr1G052720.2 , HORVU7Hr1G052720.1 , HORVU7Hr1G052720.6 , HORVU7Hr1G052720.5 , HORVU7Hr1G052720.4 , HORVU7Hr1G039510.7 , HORVU7Hr1G039510.6 , HORVU7Hr1G039510.9 , HORVU7Hr1G039510.8 , HORVU7Hr1G039510.2
Wheat TraesCS7A02G255400 , TraesCS7A02G193200 , TraesCS7D02G194500 , TraesCS7D02G194500 , TraesCS7D02G253800 , TraesCS7B02G151700 , TraesCS7B02G098500
Populus -


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cDNA sequences
Sobic.007G119900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G025800 dual specificity protein phosphatase, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
2 Sobic.003G083900 metallo-beta-lactamase family protein, putative, expressed -
3 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
4 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
5 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
6 Sobic.002G253100 30S ribosomal protein S16, putative, expressed K02959: RP-S16, MRPS16, small subunit ribosomal protein S16
7 Sobic.009G001100 expressed protein -
8 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
9 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
10 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
11 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
12 Sobic.010G176500 expressed protein -
13 Sobic.006G183000 RING zinc finger protein, putative, expressed -
14 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
15 Sobic.004G260400 expressed protein K07018: uncharacterized protein
16 Sobic.006G267300 expressed protein -
17 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
18 Sobic.006G203100 expressed protein -
19 Sobic.006G087100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K14943: muscleblind
20 Sobic.009G108500 acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase


Gene co-expression network
sample Sobic007G119900 Sobic007G119900 Sobic005G025800 Sobic005G025800 Sobic007G119900--Sobic005G025800 Sobic003G083900 Sobic003G083900 Sobic007G119900--Sobic003G083900 Sobic004G133700 Sobic004G133700 Sobic007G119900--Sobic004G133700 Sobic001G152000 Sobic001G152000 Sobic007G119900--Sobic001G152000 Sobic001G226000 Sobic001G226000 Sobic007G119900--Sobic001G226000 Sobic002G253100 Sobic002G253100 Sobic007G119900--Sobic002G253100 Sobic009G001100 Sobic009G001100 Sobic007G119900--Sobic009G001100 Sobic001G291800 Sobic001G291800 Sobic007G119900--Sobic001G291800 Sobic001G168900 Sobic001G168900 Sobic007G119900--Sobic001G168900 Sobic007G027700 Sobic007G027700 Sobic005G025800--Sobic007G027700 Sobic005G025800--Sobic001G226000 Sobic005G025800--Sobic009G001100 Sobic003G253400 Sobic003G253400 Sobic005G025800--Sobic003G253400 Sobic005G025800--Sobic007G119900 Sobic005G025800--Sobic004G133700 Sobic007G191700 Sobic007G191700 Sobic005G025800--Sobic007G191700 Sobic001G469800 Sobic001G469800 Sobic005G025800--Sobic001G469800 Sobic006G267300 Sobic006G267300 Sobic005G025800--Sobic006G267300 Sobic003G083900--Sobic004G133700 Sobic003G307900 Sobic003G307900 Sobic003G083900--Sobic003G307900 Sobic003G083900--Sobic007G119900 Sobic003G083900--Sobic001G226000 Sobic002G077900 Sobic002G077900 Sobic003G083900--Sobic002G077900 Sobic001G009800 Sobic001G009800 Sobic003G083900--Sobic001G009800 Sobic004G249300 Sobic004G249300 Sobic003G083900--Sobic004G249300 Sobic003G083900--Sobic005G025800 Sobic001G115500 Sobic001G115500 Sobic003G083900--Sobic001G115500 Sobic004G133700--Sobic001G291800 Sobic004G133700--Sobic003G083900 Sobic004G133700--Sobic001G226000 Sobic004G133700--Sobic005G025800 Sobic004G133700--Sobic007G119900 Sobic005G199200 Sobic005G199200 Sobic004G133700--Sobic005G199200 Sobic004G133700--Sobic001G168900 Sobic004G133700--Sobic001G152000 Sobic007G183300 Sobic007G183300 Sobic004G133700--Sobic007G183300 Sobic002G268400 Sobic002G268400 Sobic001G152000--Sobic002G268400 Sobic004G074300 Sobic004G074300 Sobic001G152000--Sobic004G074300 Sobic009G033900 Sobic009G033900 Sobic001G152000--Sobic009G033900 Sobic001G294900 Sobic001G294900 Sobic001G152000--Sobic001G294900 Sobic004G019600 Sobic004G019600 Sobic001G152000--Sobic004G019600 Sobic006G252100 Sobic006G252100 Sobic001G152000--Sobic006G252100 Sobic001G152000--Sobic001G009800 Sobic003G405700 Sobic003G405700 Sobic001G152000--Sobic003G405700 Sobic006G183000 Sobic006G183000 Sobic001G152000--Sobic006G183000 Sobic009G030300 Sobic009G030300 Sobic001G226000--Sobic009G030300 Sobic006G278700 Sobic006G278700 Sobic001G226000--Sobic006G278700 Sobic001G226000--Sobic006G267300 Sobic003G115100 Sobic003G115100 Sobic001G226000--Sobic003G115100 Sobic001G226000--Sobic002G077900 Sobic009G195200 Sobic009G195200 Sobic001G226000--Sobic009G195200 Sobic003G433500 Sobic003G433500 Sobic001G226000--Sobic003G433500 Sobic001G010600 Sobic001G010600 Sobic001G226000--Sobic001G010600 Sobic004G013600 Sobic004G013600 Sobic001G226000--Sobic004G013600 Sobic006G216000 Sobic006G216000 Sobic002G253100--Sobic006G216000 Sobic002G253100--Sobic007G119900 Sobic005G132700 Sobic005G132700 Sobic002G253100--Sobic005G132700 Sobic002G253100--Sobic001G152000 Sobic002G402500 Sobic002G402500 Sobic002G253100--Sobic002G402500 Sobic006G020900 Sobic006G020900 Sobic002G253100--Sobic006G020900 Sobic003G119400 Sobic003G119400 Sobic002G253100--Sobic003G119400 Sobic001G404200 Sobic001G404200 Sobic002G253100--Sobic001G404200 Sobic004G248900 Sobic004G248900 Sobic002G253100--Sobic004G248900 Sobic009G001100--Sobic005G025800 Sobic009G001100--Sobic007G191700 Sobic003G121300 Sobic003G121300 Sobic009G001100--Sobic003G121300 Sobic001G472100 Sobic001G472100 Sobic009G001100--Sobic001G472100 Sobic010G232900 Sobic010G232900 Sobic009G001100--Sobic010G232900 Sobic001G042200 Sobic001G042200 Sobic009G001100--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic009G001100--Sobic006G049100 Sobic006G248500 Sobic006G248500 Sobic009G001100--Sobic006G248500 Sobic010G237900 Sobic010G237900 Sobic009G001100--Sobic010G237900 Sobic004G340400 Sobic004G340400 Sobic001G291800--Sobic004G340400 Sobic001G145400 Sobic001G145400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic010G186600 Sobic010G186600 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G291800--Sobic001G168900 Sobic007G187600 Sobic007G187600 Sobic001G168900--Sobic007G187600 Sobic004G307500 Sobic004G307500 Sobic001G168900--Sobic004G307500 Sobic001G168900--Sobic002G077900 Sobic001G168900--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic001G168900--Sobic009G258400 Sobic001G168900--Sobic001G042200 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic003G132000 Sobic003G132000 Sobic001G168900--Sobic003G132000
Octagon: transcription factors


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