Gene annotation
| Transcriptome id | Sobic.006G236700.1,Sobic.006G236700.3,Sobic.006G236700.2 |
|---|---|
| Synonym | SbPGP18, P-glycoprotein, ABCB19, MDR1, ATMDR11, MDR11, ATABCB19, PGP19, Sb06g030350, ATPGP19, ATMDR1 |
| Functional annotation | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments" (PubMedID : 20528920) multidrug resistance protein, putative, expressed |
| UniProt | C5Y8Z4 , A0A1Z5RFR5 |
| Pfam | PF00005 PF00664 PF00664 PF00005 |
| Panther DB | PTHR24221 PTHR24221:SF149 |
| NCBI CDD | - |
| KEGG Orthology | K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1 |
| Gene Ontology | GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport GO:0016021integral component of membrane GO:0006810transport GO:0005524ATP binding GO:0016887ATPase activity |
Orthologs (automatic annotation)
| TAIR | AT3G28860 : ATP binding cassette subfamily B19 |
|---|---|
| RAP-DB (Rice) | LOC_Os04g38570.1 : multidrug resistance protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a057176 , Zm00025a018062 , Zm00025a056200 , Zm00025a009581 |
| Brachypodium | KQJ84902 |
| Barley | HORVU2Hr1G115180.1 , HORVU2Hr1G115180.2 , HORVU2Hr1G115180.3 , HORVU2Hr1G115180.4 , HORVU2Hr1G115180.5 , HORVU2Hr1G115180.6 , HORVU2Hr1G115180.7 , HORVU4Hr1G077060.2 , HORVU4Hr1G077060.3 , HORVU4Hr1G077060.1 , HORVU4Hr1G077060.5 |
| Wheat | TraesCS2D02G523100 , TraesCS2D02G523100 , TraesCS2A02G521400 , TraesCS2A02G521400 , TraesCS2B02G550700 , TraesCS2B02G550700 , TraesCS2A02G521400 , TraesCS2B02G341800 , TraesCS2A02G344300 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G420100 | RNA recognition motif containing protein, putative, expressed | K13207: CUGBP, BRUNOL, CUG-BP- and ETR3-like factor |
| 2 | Sobic.004G233700 | glycosyl hydrolase family 3 protein, putative, expressed | - |
| 3 | Sobic.004G054000 | expressed protein | - |
| 4 | Sobic.007G113300 | BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed | - |
| 5 | Sobic.002G034301 | - | - |
| 6 | Sobic.004G286700 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 7 | Sobic.001G144200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed | - |
| 8 | Sobic.007G208100 | heavy metal-associated domain containing protein, expressed | - |
| 9 | Sobic.001G468500 | ethylene-responsive element-binding protein, putative, expressed | - |
| 10 | Sobic.003G003700 | ABIL2, putative, expressed | - |
| 11 | Sobic.005G231300 | thaumatin, putative, expressed | - |
| 12 | Sobic.008G143000 | expressed protein | - |
| 13 | Sobic.008G141200 | DUF1336 domain containing protein, expressed | - |
| 14 | Sobic.009G059500 | solute carrier family 35 member E3, putative, expressed | K15285: solute carrier family 35, member E3 |
| 15 | Sobic.005G025900 | "domain confirmed by Pfam database, expression supported by NCBI EST database,expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed | K13947: auxin efflux carrier family protein |
| 16 | Sobic.004G152200 | glycosyltransferase, putative, expressed | - |
| 17 | Sobic.010G218300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed | - |
| 18 | Sobic.004G263700 | expressed protein | - |
| 19 | Sobic.009G208900 | expressed protein | - |
| 20 | Sobic.003G017500 | TTL1, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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