Gene annotation
Transcriptome id Sobic.010G218300.2,Sobic.010G218300.3,Sobic.010G218300.1
Synonym Sb10g026430
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DNA binding protein, putative, expressed
UniProt A0A194YKR6 , A0A194YKM9
Pfam PF02485
Panther DB PTHR31042 PTHR31042:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0008375acetylglucosaminyltransferase activity


Orthologs (automatic annotation)
TAIR AT2G19160 : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
RAP-DB (Rice) LOC_Os06g45110.1 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a051726 , Zm00025a041983 , Zm00025a034767 , Zm00025a019138
Brachypodium KQK16968 , KQK16967 , KQK16966 , KQJ93594 , KQJ93595
Barley HORVU7Hr1G109810.6 , HORVU7Hr1G109810.7 , HORVU7Hr1G109810.4 , HORVU7Hr1G109810.5 , HORVU7Hr1G109810.2 , HORVU7Hr1G109810.1 , HORVU7Hr1G109810.10 , HORVU7Hr1G109810.11 , HORVU7Hr1G109810.12 , HORVU7Hr1G109810.13
Wheat TraesCS7D02G476000 , TraesCS7B02G392700 , TraesCS7A02G489600
Populus -


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cDNA sequences
Sobic.010G218300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G460400 expressed protein -
2 Sobic.002G283900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
4 Sobic.010G045400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
5 Sobic.006G160900 NAC domain containing protein, putative, expressed -
6 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
7 Sobic.008G191400 expressed protein -
8 Sobic.009G221500 lipid phosphatase protein, putative, expressed -
9 Sobic.001G245800 expressed protein -
10 Sobic.008G157000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
11 Sobic.006G072000 OsWAK26 - OsWAK receptor-like protein kinase, expressed -
12 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3
13 Sobic.001G067800 metal cation transporter, putative, expressed K07238: TC.ZIP, zupT, ZRT3, zinc transporter, ZIP family
14 Sobic.003G231600 CBS domain containing membrane protein, putative, expressed -
15 Sobic.010G241800 - -
16 Sobic.003G183300 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.004G193500 expressed protein -
18 Sobic.001G365200 aminotransferase domain containing protein, putative, expressed -
19 Sobic.003G426500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.009G074500 expressed protein -


Gene co-expression network
sample Sobic010G218300 Sobic010G218300 Sobic001G460400 Sobic001G460400 Sobic010G218300--Sobic001G460400 Sobic002G283900 Sobic002G283900 Sobic010G218300--Sobic002G283900 Sobic004G161900 Sobic004G161900 Sobic010G218300--Sobic004G161900 Sobic010G045400 Sobic010G045400 Sobic010G218300--Sobic010G045400 Sobic006G160900 Sobic006G160900 Sobic010G218300--Sobic006G160900 Sobic009G238900 Sobic009G238900 Sobic010G218300--Sobic009G238900 Sobic008G191400 Sobic008G191400 Sobic010G218300--Sobic008G191400 Sobic009G221500 Sobic009G221500 Sobic010G218300--Sobic009G221500 Sobic001G245800 Sobic001G245800 Sobic010G218300--Sobic001G245800 Sobic001G360700 Sobic001G360700 Sobic001G460400--Sobic001G360700 Sobic001G067800 Sobic001G067800 Sobic001G460400--Sobic001G067800 Sobic001G460400--Sobic004G161900 Sobic003G017601 Sobic003G017601 Sobic001G460400--Sobic003G017601 Sobic002G207200 Sobic002G207200 Sobic001G460400--Sobic002G207200 Sobic001G227850 Sobic001G227850 Sobic001G460400--Sobic001G227850 Sobic009G246700 Sobic009G246700 Sobic001G460400--Sobic009G246700 Sobic008G037900 Sobic008G037900 Sobic001G460400--Sobic008G037900 Sobic001G460400--Sobic010G218300 Sobic003G231600 Sobic003G231600 Sobic002G283900--Sobic003G231600 Sobic005G219600 Sobic005G219600 Sobic002G283900--Sobic005G219600 Sobic002G283900--Sobic001G067800 Sobic001G302500 Sobic001G302500 Sobic002G283900--Sobic001G302500 Sobic002G283900--Sobic010G218300 Sobic002G283900--Sobic008G191400 Sobic003G273700 Sobic003G273700 Sobic002G283900--Sobic003G273700 Sobic002G283900--Sobic001G227850 Sobic001G218500 Sobic001G218500 Sobic002G283900--Sobic001G218500 Sobic003G368000 Sobic003G368000 Sobic004G161900--Sobic003G368000 Sobic004G161900--Sobic003G017601 Sobic004G161900--Sobic010G045400 Sobic004G161900--Sobic008G037900 Sobic004G161900--Sobic001G460400 Sobic004G161900--Sobic001G218500 Sobic003G079100 Sobic003G079100 Sobic004G161900--Sobic003G079100 Sobic002G383900 Sobic002G383900 Sobic004G161900--Sobic002G383900 Sobic003G020500 Sobic003G020500 Sobic004G161900--Sobic003G020500 Sobic010G045400--Sobic008G037900 Sobic010G045400--Sobic003G017601 Sobic010G045400--Sobic003G368000 Sobic010G045400--Sobic004G161900 Sobic006G230300 Sobic006G230300 Sobic010G045400--Sobic006G230300 Sobic001G299100 Sobic001G299100 Sobic010G045400--Sobic001G299100 Sobic010G045400--Sobic008G191400 Sobic010G045400--Sobic001G218500 Sobic010G213600 Sobic010G213600 Sobic010G045400--Sobic010G213600 Sobic009G008800 Sobic009G008800 Sobic006G160900--Sobic009G008800 Sobic001G250100 Sobic001G250100 Sobic006G160900--Sobic001G250100 Sobic003G082700 Sobic003G082700 Sobic006G160900--Sobic003G082700 Sobic010G155800 Sobic010G155800 Sobic006G160900--Sobic010G155800 Sobic001G484000 Sobic001G484000 Sobic006G160900--Sobic001G484000 Sobic005G127200 Sobic005G127200 Sobic006G160900--Sobic005G127200 Sobic001G471800 Sobic001G471800 Sobic006G160900--Sobic001G471800 Sobic010G093300 Sobic010G093300 Sobic006G160900--Sobic010G093300 Sobic003G352700 Sobic003G352700 Sobic006G160900--Sobic003G352700 Sobic003G219800 Sobic003G219800 Sobic009G238900--Sobic003G219800 Sobic001G444800 Sobic001G444800 Sobic009G238900--Sobic001G444800 Sobic005G112800 Sobic005G112800 Sobic009G238900--Sobic005G112800 Sobic006G035900 Sobic006G035900 Sobic009G238900--Sobic006G035900 Sobic001G040100 Sobic001G040100 Sobic009G238900--Sobic001G040100 Sobic001G418100 Sobic001G418100 Sobic009G238900--Sobic001G418100 Sobic002G361700 Sobic002G361700 Sobic009G238900--Sobic002G361700 Sobic003G443300 Sobic003G443300 Sobic009G238900--Sobic003G443300 Sobic001G514200 Sobic001G514200 Sobic009G238900--Sobic001G514200 Sobic008G191400--Sobic001G299100 Sobic006G092700 Sobic006G092700 Sobic008G191400--Sobic006G092700 Sobic003G319400 Sobic003G319400 Sobic008G191400--Sobic003G319400 Sobic006G135300 Sobic006G135300 Sobic008G191400--Sobic006G135300 Sobic007G100700 Sobic007G100700 Sobic008G191400--Sobic007G100700 Sobic003G426500 Sobic003G426500 Sobic008G191400--Sobic003G426500 Sobic004G306900 Sobic004G306900 Sobic008G191400--Sobic004G306900 Sobic009G181600 Sobic009G181600 Sobic008G191400--Sobic009G181600 Sobic010G082000 Sobic010G082000 Sobic008G191400--Sobic010G082000 Sobic007G050200 Sobic007G050200 Sobic009G221500--Sobic007G050200 Sobic006G256900 Sobic006G256900 Sobic009G221500--Sobic006G256900 Sobic009G219200 Sobic009G219200 Sobic009G221500--Sobic009G219200 Sobic004G322100 Sobic004G322100 Sobic009G221500--Sobic004G322100 Sobic010G148800 Sobic010G148800 Sobic009G221500--Sobic010G148800 Sobic009G199001 Sobic009G199001 Sobic009G221500--Sobic009G199001 Sobic004G323300 Sobic004G323300 Sobic009G221500--Sobic004G323300 Sobic001G438200 Sobic001G438200 Sobic009G221500--Sobic001G438200 Sobic001G430100 Sobic001G430100 Sobic009G221500--Sobic001G430100 Sobic010G138300 Sobic010G138300 Sobic001G245800--Sobic010G138300 Sobic009G074500 Sobic009G074500 Sobic001G245800--Sobic009G074500 Sobic001G261460 Sobic001G261460 Sobic001G245800--Sobic001G261460 Sobic010G047600 Sobic010G047600 Sobic001G245800--Sobic010G047600 Sobic001G245800--Sobic001G514200 Sobic001G245800--Sobic009G199001 Sobic009G221800 Sobic009G221800 Sobic001G245800--Sobic009G221800 Sobic008G102800 Sobic008G102800 Sobic001G245800--Sobic008G102800 Sobic004G170800 Sobic004G170800 Sobic001G245800--Sobic004G170800
Octagon: transcription factors


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