Gene annotation
Transcriptome id Sobic.001G365200.1,Sobic.001G365200.2
Synonym Sb01g034820
Functional annotation aminotransferase domain containing protein, putative, expressed
UniProt A0A1B6QN33 , A0A1B6QN32
Pfam PF01063
Panther DB PTHR11825 PTHR11825:SF7
NCBI CDD KOG0975; Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily
KEGG Orthology -
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT5G27410 : D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
RAP-DB (Rice) LOC_Os03g24460.2 : aminotransferase domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002557
Brachypodium PNT77379
Barley HORVU6Hr1G035190.6 , HORVU6Hr1G035190.7 , HORVU6Hr1G035190.4 , HORVU6Hr1G035190.5 , HORVU6Hr1G035190.2 , HORVU6Hr1G035190.3 , HORVU6Hr1G035190.1 , HORVU6Hr1G035190.8 , HORVU6Hr1G035190.9 , HORVU6Hr1G035190.10 , HORVU6Hr1G035190.11
Wheat TraesCS6D02G161800 , TraesCS6D02G161800 , TraesCS6D02G161800 , TraesCS6A02G172400 , TraesCS6B02G200300 , TraesCS6B02G200300
Populus -


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cDNA sequences
Sobic.001G365200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
2 Sobic.003G368000 OsFBT3 - F-box and tubby domain containing protein, expressed -
3 Sobic.002G383900 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
4 Sobic.003G105000 kinase, pfkB family, putative, expressed -
5 Sobic.005G022500 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
6 Sobic.010G045400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
7 Sobic.007G119500 expressed protein -
8 Sobic.006G000600 expressed protein -
9 Sobic.008G037900 transcription factor, putative, expressed K14431: transcription factor TGA
10 Sobic.003G270400 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.010G218300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed -
12 Sobic.003G255600 expressed protein -
13 Sobic.001G471800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin-responsive protein-related, putative, expressed -
14 Sobic.006G160900 NAC domain containing protein, putative, expressed -
15 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
16 Sobic.001G460400 expressed protein -
17 Sobic.004G079900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
18 Sobic.010G213600 histidine kinase, putative, expressed -
19 Sobic.004G013000 canopy homolog 2 precursor, putative, expressed -
20 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3


Gene co-expression network
sample Sobic001G365200 Sobic001G365200 Sobic004G161900 Sobic004G161900 Sobic001G365200--Sobic004G161900 Sobic003G368000 Sobic003G368000 Sobic001G365200--Sobic003G368000 Sobic002G383900 Sobic002G383900 Sobic001G365200--Sobic002G383900 Sobic003G105000 Sobic003G105000 Sobic001G365200--Sobic003G105000 Sobic005G022500 Sobic005G022500 Sobic001G365200--Sobic005G022500 Sobic010G045400 Sobic010G045400 Sobic001G365200--Sobic010G045400 Sobic007G119500 Sobic007G119500 Sobic001G365200--Sobic007G119500 Sobic006G000600 Sobic006G000600 Sobic001G365200--Sobic006G000600 Sobic008G037900 Sobic008G037900 Sobic001G365200--Sobic008G037900 Sobic004G161900--Sobic003G368000 Sobic003G017601 Sobic003G017601 Sobic004G161900--Sobic003G017601 Sobic004G161900--Sobic010G045400 Sobic004G161900--Sobic008G037900 Sobic001G460400 Sobic001G460400 Sobic004G161900--Sobic001G460400 Sobic001G218500 Sobic001G218500 Sobic004G161900--Sobic001G218500 Sobic003G079100 Sobic003G079100 Sobic004G161900--Sobic003G079100 Sobic004G161900--Sobic002G383900 Sobic003G020500 Sobic003G020500 Sobic004G161900--Sobic003G020500 Sobic003G368000--Sobic004G161900 Sobic003G368000--Sobic008G037900 Sobic003G099000 Sobic003G099000 Sobic003G368000--Sobic003G099000 Sobic003G368000--Sobic010G045400 Sobic003G368000--Sobic003G017601 Sobic010G097200 Sobic010G097200 Sobic003G368000--Sobic010G097200 Sobic010G191700 Sobic010G191700 Sobic003G368000--Sobic010G191700 Sobic003G368000--Sobic003G079100 Sobic002G391400 Sobic002G391400 Sobic003G368000--Sobic002G391400 Sobic002G383900--Sobic004G161900 Sobic001G263900 Sobic001G263900 Sobic002G383900--Sobic001G263900 Sobic007G020700 Sobic007G020700 Sobic002G383900--Sobic007G020700 Sobic002G383900--Sobic005G022500 Sobic005G219700 Sobic005G219700 Sobic002G383900--Sobic005G219700 Sobic007G106500 Sobic007G106500 Sobic002G383900--Sobic007G106500 Sobic002G383900--Sobic001G365200 Sobic002G207000 Sobic002G207000 Sobic002G383900--Sobic002G207000 Sobic001G314000 Sobic001G314000 Sobic002G383900--Sobic001G314000 Sobic003G105000--Sobic001G365200 Sobic004G193500 Sobic004G193500 Sobic003G105000--Sobic004G193500 Sobic005G127200 Sobic005G127200 Sobic003G105000--Sobic005G127200 Sobic003G428300 Sobic003G428300 Sobic003G105000--Sobic003G428300 Sobic010G093300 Sobic010G093300 Sobic003G105000--Sobic010G093300 Sobic003G157700 Sobic003G157700 Sobic003G105000--Sobic003G157700 Sobic003G255600 Sobic003G255600 Sobic003G105000--Sobic003G255600 Sobic010G187500 Sobic010G187500 Sobic003G105000--Sobic010G187500 Sobic002G030650 Sobic002G030650 Sobic003G105000--Sobic002G030650 Sobic001G506600 Sobic001G506600 Sobic005G022500--Sobic001G506600 Sobic005G022500--Sobic005G219700 Sobic001G002800 Sobic001G002800 Sobic005G022500--Sobic001G002800 Sobic001G503000 Sobic001G503000 Sobic005G022500--Sobic001G503000 Sobic005G022500--Sobic007G020700 Sobic001G163800 Sobic001G163800 Sobic005G022500--Sobic001G163800 Sobic008G133000 Sobic008G133000 Sobic005G022500--Sobic008G133000 Sobic007G172500 Sobic007G172500 Sobic005G022500--Sobic007G172500 Sobic002G376100 Sobic002G376100 Sobic005G022500--Sobic002G376100 Sobic010G045400--Sobic008G037900 Sobic010G045400--Sobic003G017601 Sobic010G045400--Sobic003G368000 Sobic010G045400--Sobic004G161900 Sobic006G230300 Sobic006G230300 Sobic010G045400--Sobic006G230300 Sobic001G299100 Sobic001G299100 Sobic010G045400--Sobic001G299100 Sobic008G191400 Sobic008G191400 Sobic010G045400--Sobic008G191400 Sobic010G045400--Sobic001G218500 Sobic010G213600 Sobic010G213600 Sobic010G045400--Sobic010G213600 Sobic009G170500 Sobic009G170500 Sobic007G119500--Sobic009G170500 Sobic003G270400 Sobic003G270400 Sobic007G119500--Sobic003G270400 Sobic004G047600 Sobic004G047600 Sobic007G119500--Sobic004G047600 Sobic001G072600 Sobic001G072600 Sobic007G119500--Sobic001G072600 Sobic002G167600 Sobic002G167600 Sobic007G119500--Sobic002G167600 Sobic003G378800 Sobic003G378800 Sobic007G119500--Sobic003G378800 Sobic001G360700 Sobic001G360700 Sobic007G119500--Sobic001G360700 Sobic006G144600 Sobic006G144600 Sobic007G119500--Sobic006G144600 Sobic001G406700 Sobic001G406700 Sobic007G119500--Sobic001G406700 Sobic006G000600--Sobic004G161900 Sobic009G033100 Sobic009G033100 Sobic006G000600--Sobic009G033100 Sobic006G177300 Sobic006G177300 Sobic006G000600--Sobic006G177300 Sobic006G000600--Sobic001G365200 Sobic006G000600--Sobic003G368000 Sobic005G134600 Sobic005G134600 Sobic006G000600--Sobic005G134600 Sobic004G323900 Sobic004G323900 Sobic006G000600--Sobic004G323900 Sobic005G110541 Sobic005G110541 Sobic006G000600--Sobic005G110541 Sobic006G243500 Sobic006G243500 Sobic006G000600--Sobic006G243500 Sobic008G037900--Sobic010G097200 Sobic007G220400 Sobic007G220400 Sobic008G037900--Sobic007G220400 Sobic006G205700 Sobic006G205700 Sobic008G037900--Sobic006G205700 Sobic002G111900 Sobic002G111900 Sobic008G037900--Sobic002G111900 Sobic010G241900 Sobic010G241900 Sobic008G037900--Sobic010G241900 Sobic009G065700 Sobic009G065700 Sobic008G037900--Sobic009G065700 Sobic003G441800 Sobic003G441800 Sobic008G037900--Sobic003G441800 Sobic003G167300 Sobic003G167300 Sobic008G037900--Sobic003G167300 Sobic008G037900--Sobic002G391400
Octagon: transcription factors


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