Gene annotation
Transcriptome id Sobic.006G161300.1
Synonym Sb06g023820, BETA-VPE, BETAVPE
Functional annotation vacuolar-processing enzyme precursor, putative, expressed
UniProt C5YCZ0
Pfam PF01650
Panther DB PTHR12000 PTHR12000:SF16
NCBI CDD -
KEGG Orthology K01369; legumain
Gene Ontology GO:0008233; peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT1G62710 : beta vacuolar processing enzyme
RAP-DB (Rice) LOC_Os04g45470.1 : vacuolar-processing enzyme precursor, putative, expressed
MaizeGDB (Corn) Zm00025a010421
Brachypodium PNT61570
Barley HORVU2Hr1G092080.4 , HORVU2Hr1G092080.15 , HORVU2Hr1G092080.3 , HORVU2Hr1G092080.2 , HORVU2Hr1G092080.9 , HORVU2Hr1G092080.8 , HORVU2Hr1G092080.7 , HORVU2Hr1G092080.6 , HORVU2Hr1G091880.3 , HORVU2Hr1G091880.1
Wheat TraesCS2A02G386700 , TraesCS2B02G404300 , TraesCS2D02G382400 , TraesCS2D02G383400 , TraesCS2B02G402800 , TraesCS2D02G383500 , TraesCS2B02G404000
Populus PNT44999


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cDNA sequences
Sobic.006G161300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G035500 expressed protein -
2 Sobic.002G217000 expressed protein -
3 Sobic.002G058900 OsFBX237 - F-box domain containing protein, expressed -
4 Sobic.002G059500 OsFBX237 - F-box domain containing protein, expressed -
5 Sobic.006G004100 no apical meristem protein, putative, expressed -
6 Sobic.006G040101 - -
7 Sobic.002G101200 zinc finger, C3HC4 type domain containing protein, expressed K10638: UHRF1, E3 ubiquitin-protein ligase UHRF1
8 Sobic.008G159300 KUN1 - Kunitz-type trypsin inhibitor precursor, expressed -
9 Sobic.003G266100 ESP4, putative, expressed K06100: symplekin
10 Sobic.003G225800 AAA-type ATPase family protein, putative, expressed -
11 Sobic.005G197000 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
12 Sobic.003G213100 AAA-type ATPase family protein, putative, expressed -
13 Sobic.002G015400 OsFBD13 - F-box and FBD domain containing protein, expressed -
14 Sobic.005G032500 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
15 Sobic.007G037200 expressed protein -
16 Sobic.002G300900 - -
17 Sobic.004G220900 ethylene-insensitive protein 2, putative, expressed -
18 Sobic.002G069800 OsFBX221 - F-box domain containing protein, expressed -
19 Sobic.009G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
20 Sobic.010G111400 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -


Gene co-expression network
sample Sobic006G161300 Sobic006G161300 Sobic005G035500 Sobic005G035500 Sobic006G161300--Sobic005G035500 Sobic002G217000 Sobic002G217000 Sobic006G161300--Sobic002G217000 Sobic002G058900 Sobic002G058900 Sobic006G161300--Sobic002G058900 Sobic002G059500 Sobic002G059500 Sobic006G161300--Sobic002G059500 Sobic006G004100 Sobic006G004100 Sobic006G161300--Sobic006G004100 Sobic006G040101 Sobic006G040101 Sobic006G161300--Sobic006G040101 Sobic002G101200 Sobic002G101200 Sobic006G161300--Sobic002G101200 Sobic008G159300 Sobic008G159300 Sobic006G161300--Sobic008G159300 Sobic003G266100 Sobic003G266100 Sobic006G161300--Sobic003G266100 Sobic005G035500--Sobic002G059500 Sobic005G035500--Sobic006G040101 Sobic007G025100 Sobic007G025100 Sobic005G035500--Sobic007G025100 Sobic002G300900 Sobic002G300900 Sobic005G035500--Sobic002G300900 Sobic005G035500--Sobic006G004100 Sobic010G111400 Sobic010G111400 Sobic005G035500--Sobic010G111400 Sobic005G035500--Sobic002G058900 Sobic007G131100 Sobic007G131100 Sobic005G035500--Sobic007G131100 Sobic005G035500--Sobic003G266100 Sobic003G225800 Sobic003G225800 Sobic002G217000--Sobic003G225800 Sobic002G217000--Sobic002G101200 Sobic005G197000 Sobic005G197000 Sobic002G217000--Sobic005G197000 Sobic002G217000--Sobic002G058900 Sobic007G037200 Sobic007G037200 Sobic002G217000--Sobic007G037200 Sobic005G089101 Sobic005G089101 Sobic002G217000--Sobic005G089101 Sobic005G032500 Sobic005G032500 Sobic002G217000--Sobic005G032500 Sobic002G100000 Sobic002G100000 Sobic002G217000--Sobic002G100000 Sobic002G217000--Sobic006G004100 Sobic002G058900--Sobic008G159300 Sobic002G058900--Sobic007G037200 Sobic002G058900--Sobic002G217000 Sobic002G058900--Sobic005G032500 Sobic002G015400 Sobic002G015400 Sobic002G058900--Sobic002G015400 Sobic002G058900--Sobic006G004100 Sobic002G058900--Sobic002G101200 Sobic002G058900--Sobic003G266100 Sobic002G058900--Sobic002G059500 Sobic002G059500--Sobic006G040101 Sobic002G059500--Sobic002G300900 Sobic002G059500--Sobic003G266100 Sobic002G059500--Sobic005G035500 Sobic002G059500--Sobic006G004100 Sobic002G059500--Sobic007G025100 Sobic001G511400 Sobic001G511400 Sobic002G059500--Sobic001G511400 Sobic002G059500--Sobic008G159300 Sobic002G172200 Sobic002G172200 Sobic002G059500--Sobic002G172200 Sobic004G220900 Sobic004G220900 Sobic006G004100--Sobic004G220900 Sobic006G004100--Sobic003G266100 Sobic006G004100--Sobic002G059500 Sobic006G004100--Sobic005G197000 Sobic006G004100--Sobic002G058900 Sobic006G004100--Sobic007G037200 Sobic006G004100--Sobic002G217000 Sobic006G004100--Sobic008G159300 Sobic006G004100--Sobic006G040101 Sobic006G040101--Sobic002G059500 Sobic006G040101--Sobic002G300900 Sobic006G040101--Sobic007G025100 Sobic006G040101--Sobic005G035500 Sobic006G040101--Sobic003G266100 Sobic001G297700 Sobic001G297700 Sobic006G040101--Sobic001G297700 Sobic006G040101--Sobic001G511400 Sobic006G040101--Sobic002G172200 Sobic006G040101--Sobic006G004100 Sobic002G101200--Sobic002G217000 Sobic002G101200--Sobic005G032500 Sobic002G101200--Sobic002G058900 Sobic002G101200--Sobic007G037200 Sobic002G166800 Sobic002G166800 Sobic002G101200--Sobic002G166800 Sobic002G101200--Sobic002G100000 Sobic002G101200--Sobic003G225800 Sobic006G031000 Sobic006G031000 Sobic002G101200--Sobic006G031000 Sobic009G051201 Sobic009G051201 Sobic002G101200--Sobic009G051201 Sobic008G159300--Sobic002G015400 Sobic008G159300--Sobic002G058900 Sobic008G159300--Sobic001G511400 Sobic008G159300--Sobic003G266100 Sobic008G159300--Sobic007G037200 Sobic008G159300--Sobic005G032500 Sobic008G159300--Sobic002G172200 Sobic002G172100 Sobic002G172100 Sobic008G159300--Sobic002G172100 Sobic008G159300--Sobic004G220900 Sobic003G266100--Sobic002G172200 Sobic003G266100--Sobic004G220900 Sobic003G266100--Sobic002G172100 Sobic003G294800 Sobic003G294800 Sobic003G266100--Sobic003G294800 Sobic003G266100--Sobic008G159300 Sobic003G266100--Sobic006G004100 Sobic005G082300 Sobic005G082300 Sobic003G266100--Sobic005G082300 Sobic003G266100--Sobic002G059500 Sobic003G266100--Sobic001G511400
Octagon: transcription factors


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