Gene annotation
| Transcriptome id | Sobic.005G116500.1 |
|---|---|
| Synonym | Sb05g016850 |
| Functional annotation | short-chain dehydrogenase/reductase, putative, expressed |
| UniProt | C5Y2G5 |
| Pfam | PF00106 |
| Panther DB | PTHR24322 PTHR24322:SF565 |
| NCBI CDD | KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
| KEGG Orthology | K15095; (+)-neomenthol dehydrogenase |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0008152metabolic process |
Orthologs (automatic annotation)
| TAIR | AT3G61220 : NAD(P)-binding Rossmann-fold superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g44950.1 : short-chain dehydrogenase/reductase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a056581 , Zm00025a010452 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G366500 | anthocyanin 3-O-beta-glucosyltransferase, putative, expressed | - |
| 2 | Sobic.006G074300 | LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 3 | Sobic.001G012600 | MATE efflux family protein, putative, expressed | K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family |
| 4 | Sobic.001G012200 | similar to Cytochrome P450 71E1(PubMedID : 24655390)@4-hydroxyphenylacetaldehyde oxime monooxygenase(PubMedID : 27964718)@cytochrome P450, putative, expressed | K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase |
| 5 | Sobic.004G257700 | aspartic proteinase nepenthesin-1 precursor, putative, expressed | - |
| 6 | Sobic.003G134900 | plastocyanin-like domain containing protein, putative, expressed | - |
| 7 | Sobic.007G195300 | thioesterase family protein, putative, expressed | K17362: acyl-coenzyme A thioesterase 13 |
| 8 | Sobic.005G224500 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@xylanase inhibitor, putative, expressed | - |
| 9 | Sobic.002G347300 | copper methylamine oxidase precursor, putative, expressed | K00276: AOC3, AOC2, primary-amine oxidase |
| 10 | Sobic.003G131800 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed | - |
| 11 | Sobic.009G222000 | LTPL153 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 12 | Sobic.001G012300 | "similar to Cytochrome P450 79A1, up-regulated under drought stress "(PubMedID : 24655390)@similar to Cytochrome P450 79A1(PubMedID : 24655390)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@Tyrosine N-monooxygenase(PubMedID : 27964718)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 21880107)@"Tyrosine N-monooxygenase, conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime, ER"(PubMedID : 26361733)@cytochrome P450, putative, expressed | K13027: tyrosine N-monooxygenase |
| 13 | Sobic.001G345900 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 14 | Sobic.005G190800 | Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed | K05928: tocopherol O-methyltransferase |
| 15 | Sobic.001G249500 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 16 | Sobic.008G136500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 17 | Sobic.001G012400 | "UDP-glucose glucosyltransferase, up-regulated under drought stress "(PubMedID : 24655390)@p-hydroxymandelonitrile-O-glucosyltransferase(PubMedID : 10585420)@-(PubMedID : 27964718)@UDP-glucose:p-hydroxymandelonitrile-O-glucosyltransferase. in vitro substrate regiospecificity(PubMedID : 12946413)@"Cyanohydrin beta-glucosyltransferase, similar to UDP-glucose glucosyltransferase, dhurrin biosynthesis"(PubMedID : 10585420)@cytokinin-O-glucosyltransferase 2, putative, expressed | K13030: cyanohydrin beta-glucosyltransferase |
| 18 | Sobic.002G311601 | - | - |
| 19 | Sobic.007G130800 | aldehyde dehydrogenase, putative, expressed | K00130: betB, betaine-aldehyde dehydrogenase |
| 20 | Sobic.006G175700 | down-regulated TF in developmental senescence(PubMedID : 27586543)@putative basic helix-loop-helix (bHLH) transcription factor(PubmedID : 24048646)@anthocyanin regulatory Lc protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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