Gene annotation
Transcriptome id Sobic.004G237600.1
Synonym Sb04g027990, SBH1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
sphingolipid C4-hydroxylase SUR2, putative, expressed
UniProt C5XYS9
Pfam PF04116
Panther DB PTHR11863 PTHR11863:SF52
NCBI CDD KOG0874; Sphingolipid hydroxylase
KEGG Orthology K04713; sphinganine C4-monooxygenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0006633fatty acid biosynthetic process GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT1G14290 : sphingoid base hydroxylase 2
RAP-DB (Rice) LOC_Os02g51150.1 : sphingolipid C4-hydroxylase SUR2, putative, expressed
MaizeGDB (Corn) Zm00025a042595 , Zm00025a033204 , Zm00025a022034 , Zm00025a049473
Brachypodium KQK01939
Barley HORVU6Hr1G075770.2 , HORVU6Hr1G075770.3 , HORVU6Hr1G075770.1 , HORVU7Hr1G038160.1 , HORVU7Hr1G038160.3 , HORVU7Hr1G038160.2 , HORVU6Hr1G075760.1 , HORVU6Hr1G075760.3 , HORVU6Hr1G075760.2 , HORVU6Hr1G075760.4 , HORVU6Hr1G075810.2 , HORVU6Hr1G075810.1
Wheat TraesCS6D02G286000 , TraesCS6A02G306800 , TraesCS6A02G306800 , TraesCS7B02G092200 , TraesCS7D02G188000 , TraesCS7A02G186900 , TraesCS6B02G335400
Populus -


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cDNA sequences
Sobic.004G237600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G123000 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
2 Sobic.001G180900 secretory carrier-associated membrane protein 4, putative, expressed -
3 Sobic.006G176600 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
4 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
5 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
6 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
7 Sobic.002G361300 eukaryotic aspartyl protease domain containing protein, expressed -
8 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
9 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
10 Sobic.003G412700 serine palmitoyltransferase 2, putative, expressed K00654: serine palmitoyltransferase
11 Sobic.002G251700 no apical meristem protein, putative, expressed -
12 Sobic.005G217200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.001G351700 calmodulin-binding transcription activator, putative, expressed -
14 Sobic.010G174500 protein kinase family protein, putative, expressed -
15 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
16 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
17 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
18 Sobic.002G122700 expressed protein -
19 Sobic.001G098200 magnesium-dependent phosphatase 1, putative, expressed K17619: magnesium-dependent phosphatase 1
20 Sobic.006G194500 expressed protein -


Gene co-expression network
sample Sobic004G237600 Sobic004G237600 Sobic001G123000 Sobic001G123000 Sobic004G237600--Sobic001G123000 Sobic001G180900 Sobic001G180900 Sobic004G237600--Sobic001G180900 Sobic006G176600 Sobic006G176600 Sobic004G237600--Sobic006G176600 Sobic006G034000 Sobic006G034000 Sobic004G237600--Sobic006G034000 Sobic006G148200 Sobic006G148200 Sobic004G237600--Sobic006G148200 Sobic004G234900 Sobic004G234900 Sobic004G237600--Sobic004G234900 Sobic002G361300 Sobic002G361300 Sobic004G237600--Sobic002G361300 Sobic006G225600 Sobic006G225600 Sobic004G237600--Sobic006G225600 Sobic001G323000 Sobic001G323000 Sobic004G237600--Sobic001G323000 Sobic007G007000 Sobic007G007000 Sobic001G123000--Sobic007G007000 Sobic009G259400 Sobic009G259400 Sobic001G123000--Sobic009G259400 Sobic003G344900 Sobic003G344900 Sobic001G123000--Sobic003G344900 Sobic001G120300 Sobic001G120300 Sobic001G123000--Sobic001G120300 Sobic001G098200 Sobic001G098200 Sobic001G123000--Sobic001G098200 Sobic010G090900 Sobic010G090900 Sobic001G123000--Sobic010G090900 Sobic006G114500 Sobic006G114500 Sobic001G123000--Sobic006G114500 Sobic005G091600 Sobic005G091600 Sobic001G123000--Sobic005G091600 Sobic007G177000 Sobic007G177000 Sobic001G123000--Sobic007G177000 Sobic001G180900--Sobic006G034000 Sobic001G180900--Sobic004G234900 Sobic002G378800 Sobic002G378800 Sobic001G180900--Sobic002G378800 Sobic009G079300 Sobic009G079300 Sobic001G180900--Sobic009G079300 Sobic009G126900 Sobic009G126900 Sobic001G180900--Sobic009G126900 Sobic004G274400 Sobic004G274400 Sobic001G180900--Sobic004G274400 Sobic001G180900--Sobic006G225600 Sobic008G110600 Sobic008G110600 Sobic001G180900--Sobic008G110600 Sobic003G126300 Sobic003G126300 Sobic001G180900--Sobic003G126300 Sobic002G294200 Sobic002G294200 Sobic006G176600--Sobic002G294200 Sobic010G193900 Sobic010G193900 Sobic006G176600--Sobic010G193900 Sobic010G002400 Sobic010G002400 Sobic006G176600--Sobic010G002400 Sobic006G176600--Sobic006G148200 Sobic001G049200 Sobic001G049200 Sobic006G176600--Sobic001G049200 Sobic006G222100 Sobic006G222100 Sobic006G176600--Sobic006G222100 Sobic006G176600--Sobic004G237600 Sobic007G136100 Sobic007G136100 Sobic006G176600--Sobic007G136100 Sobic003G012200 Sobic003G012200 Sobic006G176600--Sobic003G012200 Sobic003G312200 Sobic003G312200 Sobic006G034000--Sobic003G312200 Sobic006G034000--Sobic001G323000 Sobic003G436300 Sobic003G436300 Sobic006G034000--Sobic003G436300 Sobic006G034000--Sobic006G148200 Sobic006G034000--Sobic001G180900 Sobic010G130000 Sobic010G130000 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic006G034000--Sobic008G110600 Sobic009G228700 Sobic009G228700 Sobic006G034000--Sobic009G228700 Sobic006G148200--Sobic004G274400 Sobic001G085100 Sobic001G085100 Sobic006G148200--Sobic001G085100 Sobic006G148200--Sobic006G034000 Sobic006G148200--Sobic001G323000 Sobic006G148200--Sobic009G228700 Sobic001G033500 Sobic001G033500 Sobic006G148200--Sobic001G033500 Sobic001G206900 Sobic001G206900 Sobic006G148200--Sobic001G206900 Sobic010G000900 Sobic010G000900 Sobic006G148200--Sobic010G000900 Sobic001G048700 Sobic001G048700 Sobic006G148200--Sobic001G048700 Sobic004G234900--Sobic001G098200 Sobic004G234900--Sobic006G225600 Sobic002G122700 Sobic002G122700 Sobic004G234900--Sobic002G122700 Sobic001G162100 Sobic001G162100 Sobic004G234900--Sobic001G162100 Sobic002G251700 Sobic002G251700 Sobic004G234900--Sobic002G251700 Sobic010G174500 Sobic010G174500 Sobic004G234900--Sobic010G174500 Sobic006G254800 Sobic006G254800 Sobic004G234900--Sobic006G254800 Sobic004G234900--Sobic001G180900 Sobic004G234900--Sobic010G000900 Sobic001G394600 Sobic001G394600 Sobic002G361300--Sobic001G394600 Sobic009G257200 Sobic009G257200 Sobic002G361300--Sobic009G257200 Sobic010G205800 Sobic010G205800 Sobic002G361300--Sobic010G205800 Sobic001G127000 Sobic001G127000 Sobic002G361300--Sobic001G127000 Sobic007G120500 Sobic007G120500 Sobic002G361300--Sobic007G120500 Sobic009G224000 Sobic009G224000 Sobic002G361300--Sobic009G224000 Sobic001G114000 Sobic001G114000 Sobic002G361300--Sobic001G114000 Sobic004G039600 Sobic004G039600 Sobic002G361300--Sobic004G039600 Sobic004G358600 Sobic004G358600 Sobic002G361300--Sobic004G358600 Sobic006G225600--Sobic004G234900 Sobic006G225600--Sobic002G251700 Sobic006G225600--Sobic001G162100 Sobic006G225600--Sobic001G098200 Sobic003G295400 Sobic003G295400 Sobic006G225600--Sobic003G295400 Sobic006G225600--Sobic002G122700 Sobic006G225600--Sobic004G274400 Sobic001G051200 Sobic001G051200 Sobic006G225600--Sobic001G051200 Sobic001G434900 Sobic001G434900 Sobic006G225600--Sobic001G434900 Sobic001G323000--Sobic001G206900 Sobic001G323000--Sobic006G034000 Sobic001G323000--Sobic009G228700 Sobic001G057800 Sobic001G057800 Sobic001G323000--Sobic001G057800 Sobic001G323000--Sobic003G312200 Sobic001G323000--Sobic006G148200 Sobic009G207000 Sobic009G207000 Sobic001G323000--Sobic009G207000 Sobic001G323000--Sobic010G000900 Sobic001G323000--Sobic001G085100
Octagon: transcription factors


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