Gene annotation
Transcriptome id Sobic.003G289800.1
Synonym Sb03g034040
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
serine/threonine-protein kinase, putative, expressed
UniProt C5XJ70
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF66
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G38560 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os01g53640.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a027671 , Zm00025a040080
Brachypodium KQK09631 , KQK09633 , KQK09632
Barley HORVU3Hr1G070200.1 , HORVU3Hr1G070200.2 , HORVU3Hr1G070200.3 , HORVU3Hr1G070200.4 , HORVU3Hr1G070200.5 , HORVU3Hr1G070200.6
Wheat TraesCS3D02G278400 , TraesCS3B02G312300 , TraesCS3A02G278100
Populus PNT43451 , PNT43452 , PNT43453 , PNT43454 , PNT43455 , PNT43456 , PNT43457 , PNT43458 , PNT43459


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cDNA sequences
Sobic.003G289800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G383100 expressed protein -
2 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
3 Sobic.001G051300 BEE 1, putative, expressed -
4 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
5 Sobic.003G420300 zinc finger protein, putative, expressed -
6 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
7 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
8 Sobic.003G389100 formin-like protein 1 precursor, putative, expressed -
9 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
10 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
11 Sobic.003G226700 kinesin motor domain containing protein, putative, expressed K10393: KIF2_24, kinesin family member 2/24
12 Sobic.010G079100 lysM domain-containing GPI-anchored protein 1 precursor, putative, expressed -
13 Sobic.002G215200 lung seven transmembrane domain containing protein, putative, expressed -
14 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
15 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
16 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
18 Sobic.004G321400 BRUSHY 1, putative, expressed -
19 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
20 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3


Gene co-expression network
sample Sobic003G289800 Sobic003G289800 Sobic002G383100 Sobic002G383100 Sobic003G289800--Sobic002G383100 Sobic009G087000 Sobic009G087000 Sobic003G289800--Sobic009G087000 Sobic001G051300 Sobic001G051300 Sobic003G289800--Sobic001G051300 Sobic003G183700 Sobic003G183700 Sobic003G289800--Sobic003G183700 Sobic003G420300 Sobic003G420300 Sobic003G289800--Sobic003G420300 Sobic003G179500 Sobic003G179500 Sobic003G289800--Sobic003G179500 Sobic005G110535 Sobic005G110535 Sobic003G289800--Sobic005G110535 Sobic003G389100 Sobic003G389100 Sobic003G289800--Sobic003G389100 Sobic010G147700 Sobic010G147700 Sobic003G289800--Sobic010G147700 Sobic002G383100--Sobic003G289800 Sobic002G383100--Sobic009G087000 Sobic002G383100--Sobic001G051300 Sobic002G383100--Sobic010G147700 Sobic003G017500 Sobic003G017500 Sobic002G383100--Sobic003G017500 Sobic002G383100--Sobic003G179500 Sobic003G032200 Sobic003G032200 Sobic002G383100--Sobic003G032200 Sobic002G383100--Sobic003G183700 Sobic004G315700 Sobic004G315700 Sobic002G383100--Sobic004G315700 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic001G051300--Sobic003G289800 Sobic001G051300--Sobic002G383100 Sobic007G139500 Sobic007G139500 Sobic001G051300--Sobic007G139500 Sobic001G051300--Sobic009G087000 Sobic006G071628 Sobic006G071628 Sobic001G051300--Sobic006G071628 Sobic001G051300--Sobic003G179500 Sobic001G051300--Sobic010G147700 Sobic001G051300--Sobic003G017500 Sobic003G201000 Sobic003G201000 Sobic001G051300--Sobic003G201000 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic003G292700 Sobic003G292700 Sobic003G420300--Sobic003G292700 Sobic003G226700 Sobic003G226700 Sobic003G420300--Sobic003G226700 Sobic008G083500 Sobic008G083500 Sobic003G420300--Sobic008G083500 Sobic010G067600 Sobic010G067600 Sobic003G420300--Sobic010G067600 Sobic003G420300--Sobic003G289800 Sobic003G420300--Sobic004G315700 Sobic002G320600 Sobic002G320600 Sobic003G420300--Sobic002G320600 Sobic007G084200 Sobic007G084200 Sobic003G420300--Sobic007G084200 Sobic009G052100 Sobic009G052100 Sobic003G420300--Sobic009G052100 Sobic003G179500--Sobic003G183700 Sobic003G179500--Sobic010G103700 Sobic010G105400 Sobic010G105400 Sobic003G179500--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic006G116500 Sobic006G116500 Sobic003G179500--Sobic006G116500 Sobic004G047100 Sobic004G047100 Sobic003G179500--Sobic004G047100 Sobic002G290000 Sobic002G290000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700 Sobic003G389100--Sobic003G289800 Sobic003G389100--Sobic003G226700 Sobic010G079100 Sobic010G079100 Sobic003G389100--Sobic010G079100 Sobic003G389100--Sobic001G051300 Sobic003G389100--Sobic007G084200 Sobic003G389100--Sobic003G420300 Sobic002G276600 Sobic002G276600 Sobic003G389100--Sobic002G276600 Sobic003G389100--Sobic007G139500 Sobic001G425700 Sobic001G425700 Sobic003G389100--Sobic001G425700 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic010G147700--Sobic003G201000
Octagon: transcription factors


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