Gene annotation
Transcriptome id Sobic.002G215200.1
Synonym Sb02g025760
Functional annotation lung seven transmembrane domain containing protein, putative, expressed
UniProt C5XDP5
Pfam PF06814
Panther DB PTHR21229 PTHR21229:SF15
NCBI CDD KOG2568; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G72480 : Lung seven transmembrane receptor family protein
RAP-DB (Rice) LOC_Os09g26830.1 : lung seven transmembrane domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a047145 , Zm00025a013988
Brachypodium KQJ90400
Barley HORVU5Hr1G062160.8 , HORVU5Hr1G062160.1 , HORVU5Hr1G062160.2 , HORVU5Hr1G062160.4 , HORVU5Hr1G062160.5 , HORVU5Hr1G062160.6 , HORVU5Hr1G062160.7 , HORVU5Hr1G062160.3 , HORVU0Hr1G012970.1 , HORVU0Hr1G012970.2
Wheat TraesCS5B02G210600 , TraesCS5A02G213200 , TraesCS5A02G213200 , TraesCS5D02G218800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
2 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
3 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
4 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
5 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
6 Sobic.004G243900 E2F family transcription factor protein, putative, expressed -
7 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
8 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
9 Sobic.003G318900 DNA repair metallo-beta-lactamase, putative, expressed K15341: DCLRE1B, DNA cross-link repair 1B protein
10 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
11 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
12 Sobic.006G196600 expressed protein -
13 Sobic.004G270800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
14 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
15 Sobic.003G420300 zinc finger protein, putative, expressed -
16 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
17 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
18 Sobic.007G006800 pentatricopeptide, putative, expressed -
19 Sobic.002G383100 expressed protein -
20 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein


Gene co-expression network
sample Sobic002G215200 Sobic002G215200 Sobic003G289800 Sobic003G289800 Sobic002G215200--Sobic003G289800 Sobic003G183700 Sobic003G183700 Sobic002G215200--Sobic003G183700 Sobic006G051000 Sobic006G051000 Sobic002G215200--Sobic006G051000 Sobic003G369200 Sobic003G369200 Sobic002G215200--Sobic003G369200 Sobic009G087000 Sobic009G087000 Sobic002G215200--Sobic009G087000 Sobic004G243900 Sobic004G243900 Sobic002G215200--Sobic004G243900 Sobic003G201000 Sobic003G201000 Sobic002G215200--Sobic003G201000 Sobic006G195500 Sobic006G195500 Sobic002G215200--Sobic006G195500 Sobic003G318900 Sobic003G318900 Sobic002G215200--Sobic003G318900 Sobic002G383100 Sobic002G383100 Sobic003G289800--Sobic002G383100 Sobic003G289800--Sobic009G087000 Sobic001G051300 Sobic001G051300 Sobic003G289800--Sobic001G051300 Sobic003G289800--Sobic003G183700 Sobic003G420300 Sobic003G420300 Sobic003G289800--Sobic003G420300 Sobic003G179500 Sobic003G179500 Sobic003G289800--Sobic003G179500 Sobic005G110535 Sobic005G110535 Sobic003G289800--Sobic005G110535 Sobic003G389100 Sobic003G389100 Sobic003G289800--Sobic003G389100 Sobic010G147700 Sobic010G147700 Sobic003G289800--Sobic010G147700 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic003G183700--Sobic008G129200 Sobic004G321400 Sobic004G321400 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic006G051000--Sobic003G183700 Sobic006G051000--Sobic006G195500 Sobic006G051000--Sobic010G103700 Sobic006G196600 Sobic006G196600 Sobic006G051000--Sobic006G196600 Sobic006G051000--Sobic003G179500 Sobic006G051000--Sobic009G087000 Sobic009G109300 Sobic009G109300 Sobic006G051000--Sobic009G109300 Sobic006G051000--Sobic008G129200 Sobic006G051000--Sobic005G110535 Sobic003G369200--Sobic010G147700 Sobic003G369200--Sobic005G110535 Sobic003G369200--Sobic009G087000 Sobic003G369200--Sobic003G201000 Sobic003G393100 Sobic003G393100 Sobic003G369200--Sobic003G393100 Sobic009G184200 Sobic009G184200 Sobic003G369200--Sobic009G184200 Sobic003G369200--Sobic003G183700 Sobic006G029300 Sobic006G029300 Sobic003G369200--Sobic006G029300 Sobic007G168900 Sobic007G168900 Sobic003G369200--Sobic007G168900 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic009G087000--Sobic006G029300 Sobic009G087000--Sobic003G369200 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic004G243900--Sobic009G087000 Sobic004G243900--Sobic003G183700 Sobic004G243900--Sobic003G179500 Sobic004G243900--Sobic006G051000 Sobic004G243900--Sobic005G110535 Sobic003G292700 Sobic003G292700 Sobic004G243900--Sobic003G292700 Sobic004G243900--Sobic010G147700 Sobic004G243900--Sobic003G289800 Sobic004G243900--Sobic008G129200 Sobic003G201000--Sobic010G147700 Sobic003G201000--Sobic003G369200 Sobic003G201000--Sobic009G087000 Sobic003G444300 Sobic003G444300 Sobic003G201000--Sobic003G444300 Sobic005G144600 Sobic005G144600 Sobic003G201000--Sobic005G144600 Sobic010G054600 Sobic010G054600 Sobic003G201000--Sobic010G054600 Sobic003G201000--Sobic006G029300 Sobic002G290000 Sobic002G290000 Sobic003G201000--Sobic002G290000 Sobic003G201000--Sobic005G110535 Sobic006G195500--Sobic006G051000 Sobic006G195500--Sobic003G183700 Sobic006G195500--Sobic010G103700 Sobic001G377700 Sobic001G377700 Sobic006G195500--Sobic001G377700 Sobic006G195500--Sobic009G087000 Sobic006G120600 Sobic006G120600 Sobic006G195500--Sobic006G120600 Sobic006G195500--Sobic006G196600 Sobic006G195500--Sobic005G110535 Sobic006G195500--Sobic003G179500 Sobic009G172950 Sobic009G172950 Sobic003G318900--Sobic009G172950 Sobic003G032200 Sobic003G032200 Sobic003G318900--Sobic003G032200 Sobic003G318900--Sobic003G292700 Sobic002G021200 Sobic002G021200 Sobic003G318900--Sobic002G021200 Sobic003G318900--Sobic003G201000 Sobic001G083300 Sobic001G083300 Sobic003G318900--Sobic001G083300 Sobic003G318900--Sobic003G444300 Sobic003G318900--Sobic001G377700 Sobic003G318900--Sobic002G215200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.