Gene annotation
Transcriptome id Sobic.004G270800.4,Sobic.004G270800.3
Synonym CDC20.1, Sb04g030840
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
WD repeat-containing protein, putative, expressed
UniProt A0A194YRX0
Pfam PF00400
Panther DB PTHR19918 PTHR19918:SF12
NCBI CDD -
KEGG Orthology K03363; cell division cycle 20, cofactor of APC complex
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G33270 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os02g47180.1,LOC_Os02g47180.2 : WD repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021667 , Zm00025a019855 , Zm00025a032418
Brachypodium PNT63779 , PNT63778 , PNT63776 , PNT63777 , KQK00890 , PNT63780 , PNT63781 , KQJ88747
Barley HORVU5Hr1G074370.15 , HORVU5Hr1G074370.16 , HORVU5Hr1G074370.11 , HORVU5Hr1G074370.12 , HORVU5Hr1G074370.13 , HORVU5Hr1G074370.14 , HORVU5Hr1G074370.6 , HORVU5Hr1G074370.7 , HORVU5Hr1G074370.4 , HORVU5Hr1G074370.2 , HORVU5Hr1G074370.3 , HORVU5Hr1G074370.1 , HORVU6Hr1G068080.6 , HORVU6Hr1G068080.7 , HORVU6Hr1G068080.8 , HORVU5Hr1G074370.8 , HORVU5Hr1G074370.9 , HORVU5Hr1G074370.5 , HORVU6Hr1G068080.2 , HORVU6Hr1G068080.3 , HORVU6Hr1G068080.1 , HORVU6Hr1G068080.4 , HORVU6Hr1G068080.5 , HORVU6Hr1G068080.9
Wheat TraesCS6B02G296200 , TraesCS5D02G280600 , TraesCS6D02G246000 , TraesCS5A02G272600 , TraesCS6A02G268900 , TraesCS5B02G272800
Populus -


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cDNA sequences
Sobic.004G270800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G119700 WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
2 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
3 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
4 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
5 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
6 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
7 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
8 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
9 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
10 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
11 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
12 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
13 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
14 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
15 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
16 Sobic.004G321400 BRUSHY 1, putative, expressed -
17 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
18 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
19 Sobic.006G029300 expressed protein K15505: DNA repair protein RAD5
20 Sobic.002G383100 expressed protein -


Gene co-expression network
sample Sobic004G270800 Sobic004G270800 Sobic004G119700 Sobic004G119700 Sobic004G270800--Sobic004G119700 Sobic009G087000 Sobic009G087000 Sobic004G270800--Sobic009G087000 Sobic003G183700 Sobic003G183700 Sobic004G270800--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic004G270800--Sobic005G110535 Sobic010G147700 Sobic010G147700 Sobic004G270800--Sobic010G147700 Sobic003G369200 Sobic003G369200 Sobic004G270800--Sobic003G369200 Sobic006G051000 Sobic006G051000 Sobic004G270800--Sobic006G051000 Sobic006G195500 Sobic006G195500 Sobic004G270800--Sobic006G195500 Sobic008G129200 Sobic008G129200 Sobic004G270800--Sobic008G129200 Sobic004G119700--Sobic004G270800 Sobic010G054600 Sobic010G054600 Sobic004G119700--Sobic010G054600 Sobic001G142000 Sobic001G142000 Sobic004G119700--Sobic001G142000 Sobic004G119700--Sobic003G369200 Sobic004G119700--Sobic008G129200 Sobic004G119700--Sobic010G147700 Sobic004G331600 Sobic004G331600 Sobic004G119700--Sobic004G331600 Sobic004G119700--Sobic005G110535 Sobic004G119700--Sobic009G087000 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic002G290000 Sobic002G290000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic010G147700--Sobic003G201000 Sobic003G369200--Sobic010G147700 Sobic003G369200--Sobic005G110535 Sobic003G369200--Sobic009G087000 Sobic003G369200--Sobic003G201000 Sobic003G393100 Sobic003G393100 Sobic003G369200--Sobic003G393100 Sobic009G184200 Sobic009G184200 Sobic003G369200--Sobic009G184200 Sobic003G369200--Sobic003G183700 Sobic003G369200--Sobic006G029300 Sobic003G369200--Sobic007G168900 Sobic006G051000--Sobic003G183700 Sobic006G051000--Sobic006G195500 Sobic006G051000--Sobic010G103700 Sobic006G196600 Sobic006G196600 Sobic006G051000--Sobic006G196600 Sobic006G051000--Sobic003G179500 Sobic006G051000--Sobic009G087000 Sobic009G109300 Sobic009G109300 Sobic006G051000--Sobic009G109300 Sobic006G051000--Sobic008G129200 Sobic006G051000--Sobic005G110535 Sobic006G195500--Sobic006G051000 Sobic006G195500--Sobic003G183700 Sobic006G195500--Sobic010G103700 Sobic006G195500--Sobic001G377700 Sobic006G195500--Sobic009G087000 Sobic006G120600 Sobic006G120600 Sobic006G195500--Sobic006G120600 Sobic006G195500--Sobic006G196600 Sobic006G195500--Sobic005G110535 Sobic006G195500--Sobic003G179500 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic001G456500 Sobic001G456500 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic001G083300 Sobic001G083300 Sobic008G129200--Sobic001G083300 Sobic008G129200--Sobic010G054600 Sobic006G116500 Sobic006G116500 Sobic008G129200--Sobic006G116500
Octagon: transcription factors


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