Gene annotation
Transcriptome id Sobic.004G331600.1
Synonym Sb04g036050, MCM5
Functional annotation MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed
UniProt A0A097PJT9 , C5XUH8
Pfam PF14551 PF00493
Panther DB PTHR11630 PTHR11630:SF42
NCBI CDD -
KEGG Orthology K02209; MCM5, DNA replication licensing factor MCM5
Gene Ontology GO:0006260; DNA replication GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G07690 : Minichromosome maintenance (MCM2/3/5) family protein
RAP-DB (Rice) LOC_Os02g55410.1 : MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed
MaizeGDB (Corn) Zm00025a032922 , Zm00025a022480 , Zm00025a006367
Brachypodium KQK01163
Barley HORVU0Hr1G017330.16 , HORVU0Hr1G017330.17 , HORVU0Hr1G017330.14 , HORVU0Hr1G017330.15 , HORVU0Hr1G017330.12 , HORVU0Hr1G017330.13 , HORVU0Hr1G017330.10 , HORVU0Hr1G017330.11 , HORVU0Hr1G017330.18 , HORVU0Hr1G017330.19 , HORVU0Hr1G017330.31 , HORVU0Hr1G017330.4 , HORVU0Hr1G017330.5 , HORVU0Hr1G017330.6 , HORVU0Hr1G017330.7 , HORVU0Hr1G017330.1 , HORVU0Hr1G017330.2 , HORVU0Hr1G017330.3 , HORVU0Hr1G017330.8 , HORVU0Hr1G017330.9 , HORVU0Hr1G017330.29 , HORVU0Hr1G017330.28 , HORVU0Hr1G017330.27 , HORVU0Hr1G017330.26 , HORVU0Hr1G017330.25 , HORVU0Hr1G017330.24 , HORVU0Hr1G017330.23 , HORVU0Hr1G017330.22 , HORVU0Hr1G017330.21 , HORVU0Hr1G017330.20 , HORVU0Hr1G017330.30 , HORVU0Hr1G017330.32 , HORVU0Hr1G017330.33
Wheat TraesCS6A02G360600 , TraesCS6B02G393500 , TraesCS6B02G393500 , TraesCS6B02G393500 , TraesCS6D02G344100 , TraesCS6D02G344100
Populus -


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cDNA sequences
Sobic.004G331600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
2 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
3 Sobic.010G054600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
4 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
5 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
6 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
7 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
8 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
9 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
10 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
11 Sobic.006G116500 expressed protein -
12 Sobic.003G361200 CDC6 - Putative DNA replication initiation protein, expressed K02213: cell division control protein 6
13 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
14 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
15 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
16 Sobic.002G272300 expressed protein -
17 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.004G321400 BRUSHY 1, putative, expressed -
19 Sobic.001G013400 nuf2 family protein, expressed -
20 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3


Gene co-expression network
sample Sobic004G331600 Sobic004G331600 Sobic001G456500 Sobic001G456500 Sobic004G331600--Sobic001G456500 Sobic008G129200 Sobic008G129200 Sobic004G331600--Sobic008G129200 Sobic010G054600 Sobic010G054600 Sobic004G331600--Sobic010G054600 Sobic009G087000 Sobic009G087000 Sobic004G331600--Sobic009G087000 Sobic001G142000 Sobic001G142000 Sobic004G331600--Sobic001G142000 Sobic002G223900 Sobic002G223900 Sobic004G331600--Sobic002G223900 Sobic003G183700 Sobic003G183700 Sobic004G331600--Sobic003G183700 Sobic010G147700 Sobic010G147700 Sobic004G331600--Sobic010G147700 Sobic007G007800 Sobic007G007800 Sobic004G331600--Sobic007G007800 Sobic006G116500 Sobic006G116500 Sobic001G456500--Sobic006G116500 Sobic001G456500--Sobic004G331600 Sobic001G456500--Sobic001G142000 Sobic001G083300 Sobic001G083300 Sobic001G456500--Sobic001G083300 Sobic001G456500--Sobic008G129200 Sobic001G456500--Sobic002G223900 Sobic001G169800 Sobic001G169800 Sobic001G456500--Sobic001G169800 Sobic003G444300 Sobic003G444300 Sobic001G456500--Sobic003G444300 Sobic004G355500 Sobic004G355500 Sobic001G456500--Sobic004G355500 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic008G129200--Sobic005G110535 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic008G129200--Sobic001G083300 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500 Sobic010G054600--Sobic004G331600 Sobic010G054600--Sobic001G142000 Sobic010G054600--Sobic008G129200 Sobic004G119700 Sobic004G119700 Sobic010G054600--Sobic004G119700 Sobic010G054600--Sobic001G456500 Sobic003G201000 Sobic003G201000 Sobic010G054600--Sobic003G201000 Sobic003G361200 Sobic003G361200 Sobic010G054600--Sobic003G361200 Sobic010G054600--Sobic010G147700 Sobic010G054600--Sobic009G087000 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic009G087000--Sobic004G321400 Sobic009G087000--Sobic004G331600 Sobic003G179500 Sobic003G179500 Sobic009G087000--Sobic003G179500 Sobic001G142000--Sobic001G456500 Sobic001G142000--Sobic010G054600 Sobic001G142000--Sobic004G331600 Sobic001G142000--Sobic003G444300 Sobic001G142000--Sobic008G129200 Sobic001G142000--Sobic001G083300 Sobic001G142000--Sobic006G116500 Sobic001G013400 Sobic001G013400 Sobic001G142000--Sobic001G013400 Sobic004G075900 Sobic004G075900 Sobic001G142000--Sobic004G075900 Sobic002G223900--Sobic001G456500 Sobic002G223900--Sobic001G083300 Sobic001G105800 Sobic001G105800 Sobic002G223900--Sobic001G105800 Sobic002G223900--Sobic004G331600 Sobic002G223900--Sobic007G007800 Sobic002G223900--Sobic008G129200 Sobic002G223900--Sobic006G116500 Sobic002G223900--Sobic003G183700 Sobic003G387700 Sobic003G387700 Sobic002G223900--Sobic003G387700 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic010G147700--Sobic003G201000 Sobic002G272300 Sobic002G272300 Sobic007G007800--Sobic002G272300 Sobic007G007800--Sobic001G105800 Sobic009G184200 Sobic009G184200 Sobic007G007800--Sobic009G184200 Sobic007G007800--Sobic001G013400 Sobic007G007800--Sobic002G223900 Sobic007G007800--Sobic004G331600 Sobic005G020100 Sobic005G020100 Sobic007G007800--Sobic005G020100 Sobic010G092400 Sobic010G092400 Sobic007G007800--Sobic010G092400 Sobic007G007800--Sobic001G083300
Octagon: transcription factors


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