Gene annotation
Transcriptome id Sobic.009G172950.1
Synonym -
Functional annotation -
UniProt A0A1Z5R420
Pfam PF14551 PF05701 PF00493
Panther DB PTHR11630 PTHR11630:SF46
NCBI CDD -
KEGG Orthology K02541; DNA replication licensing factor MCM3
Gene Ontology GO:0006260; DNA replication GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G46280 : Minichromosome maintenance (MCM2/3/5) family protein
RAP-DB (Rice) LOC_Os05g39850.1 : MCM3 - Putative minichromosome maintenance MCM complex subunit 3, expressed
MaizeGDB (Corn) Zm00025a037788 , Zm00025a037787 , Zm00025a043983 , Zm00025a037347 , Zm00025a026971
Brachypodium KQK05767 , KQK05766 , KQK05765 , KQK05764 , KQK05769 , KQK05768 , KQK05770 , KQJ81400
Barley HORVU1Hr1G070110.2 , HORVU1Hr1G070110.3 , HORVU1Hr1G070110.1 , HORVU1Hr1G070110.6 , HORVU1Hr1G070110.7 , HORVU1Hr1G070110.5 , HORVU1Hr1G070110.8 , HORVU1Hr1G070110.9 , HORVU1Hr1G070110.28 , HORVU1Hr1G070110.10 , HORVU1Hr1G070110.11 , HORVU1Hr1G070110.12 , HORVU1Hr1G070110.14 , HORVU1Hr1G070110.15 , HORVU1Hr1G070110.16 , HORVU1Hr1G070110.17 , HORVU1Hr1G070110.18 , HORVU1Hr1G070110.19 , HORVU1Hr1G070110.13 , HORVU1Hr1G070110.25 , HORVU1Hr1G070110.24 , HORVU1Hr1G070110.27 , HORVU1Hr1G070110.26 , HORVU1Hr1G070110.21 , HORVU1Hr1G070110.20 , HORVU1Hr1G070110.23 , HORVU1Hr1G070110.22 , HORVU1Hr1G070110.29 , HORVU1Hr1G070110.30 , HORVU1Hr1G070110.31 , HORVU1Hr1G070110.4
Wheat TraesCS1D02G298400 , TraesCS1D02G298400 , TraesCS1A02G299500 , TraesCS1A02G299500 , TraesCS1B02G309300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
2 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
3 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
4 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
5 Sobic.001G083300 transducin family protein, putative, expressed K02180: cell cycle arrest protein BUB3
6 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
7 Sobic.004G321400 BRUSHY 1, putative, expressed -
8 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
9 Sobic.001G146900 expressed protein -
10 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
11 Sobic.007G008300 WD domain, G-beta repeat domain containing protein, expressed K10751: chromatin assembly factor 1 subunit B
12 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
13 Sobic.005G157300 protein binding protein, putative, expressed -
14 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
15 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
16 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
17 Sobic.003G055600 expressed protein -
18 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
19 Sobic.005G143100 expressed protein -
20 Sobic.010G086000 cyclin, putative, expressed K18810: cyclin D1/2/4, plant


Gene co-expression network
sample Sobic009G172950 Sobic009G172950 Sobic003G183700 Sobic003G183700 Sobic009G172950--Sobic003G183700 Sobic009G087000 Sobic009G087000 Sobic009G172950--Sobic009G087000 Sobic003G032200 Sobic003G032200 Sobic009G172950--Sobic003G032200 Sobic003G444300 Sobic003G444300 Sobic009G172950--Sobic003G444300 Sobic001G083300 Sobic001G083300 Sobic009G172950--Sobic001G083300 Sobic009G184200 Sobic009G184200 Sobic009G172950--Sobic009G184200 Sobic004G321400 Sobic004G321400 Sobic009G172950--Sobic004G321400 Sobic001G105800 Sobic001G105800 Sobic009G172950--Sobic001G105800 Sobic001G146900 Sobic001G146900 Sobic009G172950--Sobic001G146900 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G179500 Sobic003G179500 Sobic003G183700--Sobic003G179500 Sobic005G110535 Sobic005G110535 Sobic003G183700--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic010G147700 Sobic010G147700 Sobic003G183700--Sobic010G147700 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic003G032200--Sobic009G184200 Sobic010G086000 Sobic010G086000 Sobic003G032200--Sobic010G086000 Sobic010G105400 Sobic010G105400 Sobic003G032200--Sobic010G105400 Sobic010G241100 Sobic010G241100 Sobic003G032200--Sobic010G241100 Sobic003G032200--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic003G032200--Sobic006G142500 Sobic002G296000 Sobic002G296000 Sobic003G032200--Sobic002G296000 Sobic003G444100 Sobic003G444100 Sobic003G032200--Sobic003G444100 Sobic002G204400 Sobic002G204400 Sobic003G032200--Sobic002G204400 Sobic001G456500 Sobic001G456500 Sobic003G444300--Sobic001G456500 Sobic003G444300--Sobic001G083300 Sobic001G169800 Sobic001G169800 Sobic003G444300--Sobic001G169800 Sobic003G444300--Sobic001G105800 Sobic001G142000 Sobic001G142000 Sobic003G444300--Sobic001G142000 Sobic003G444300--Sobic004G331600 Sobic003G201000 Sobic003G201000 Sobic003G444300--Sobic003G201000 Sobic002G303800 Sobic002G303800 Sobic003G444300--Sobic002G303800 Sobic003G444300--Sobic010G105400 Sobic001G083300--Sobic001G456500 Sobic002G223900 Sobic002G223900 Sobic001G083300--Sobic002G223900 Sobic001G083300--Sobic003G444300 Sobic001G083300--Sobic010G147700 Sobic001G083300--Sobic009G087000 Sobic001G083300--Sobic003G183700 Sobic001G083300--Sobic008G129200 Sobic001G083300--Sobic001G105800 Sobic001G083300--Sobic004G331600 Sobic009G184200--Sobic002G204400 Sobic009G184200--Sobic010G105400 Sobic001G398400 Sobic001G398400 Sobic009G184200--Sobic001G398400 Sobic003G393100 Sobic003G393100 Sobic009G184200--Sobic003G393100 Sobic010G129700 Sobic010G129700 Sobic009G184200--Sobic010G129700 Sobic009G184200--Sobic003G032200 Sobic001G170800 Sobic001G170800 Sobic009G184200--Sobic001G170800 Sobic007G007800 Sobic007G007800 Sobic009G184200--Sobic007G007800 Sobic003G260700 Sobic003G260700 Sobic009G184200--Sobic003G260700 Sobic004G321400--Sobic003G183700 Sobic004G321400--Sobic009G087000 Sobic004G321400--Sobic005G110535 Sobic002G290000 Sobic002G290000 Sobic004G321400--Sobic002G290000 Sobic004G321400--Sobic003G369200 Sobic004G321400--Sobic008G129200 Sobic004G095200 Sobic004G095200 Sobic004G321400--Sobic004G095200 Sobic004G321400--Sobic009G172950 Sobic004G321400--Sobic004G331600 Sobic001G105800--Sobic007G007800 Sobic001G105800--Sobic002G223900 Sobic001G105800--Sobic009G184200 Sobic001G105800--Sobic003G444300 Sobic003G387700 Sobic003G387700 Sobic001G105800--Sobic003G387700 Sobic001G105800--Sobic001G083300 Sobic001G105800--Sobic001G456500 Sobic001G105800--Sobic010G105400 Sobic001G105800--Sobic009G172950 Sobic001G146900--Sobic009G172950 Sobic001G146900--Sobic009G087000 Sobic001G146900--Sobic003G183700 Sobic001G146900--Sobic001G456500 Sobic001G146900--Sobic001G083300 Sobic001G146900--Sobic002G303800 Sobic001G146900--Sobic003G444300 Sobic001G146900--Sobic004G321400 Sobic001G146900--Sobic001G169800
Octagon: transcription factors


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