Gene annotation
Transcriptome id Sobic.010G079100.1
Synonym Sb10g006860, LYM1
Functional annotation lysM domain-containing GPI-anchored protein 1 precursor, putative, expressed
UniProt C5Z6D9
Pfam PF01476
Panther DB PTHR23354 PTHR23354:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21880 : lysm domain GPI-anchored protein 1 precursor
RAP-DB (Rice) LOC_Os06g10660.1 : lysM domain-containing GPI-anchored protein 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a022251 , Zm00025a042490
Brachypodium KQK19057 , KQK19058
Barley HORVU7Hr1G035300.2 , HORVU7Hr1G035300.3 , HORVU7Hr1G035300.1 , HORVU7Hr1G035300.4 , HORVU7Hr1G035300.5
Wheat TraesCS6A02G328800 , TraesCS7A02G168500 , TraesCS6D02G307700 , TraesCS7D02G169400 , TraesCS7B02G073300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
2 Sobic.003G412800 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
3 Sobic.001G369800 monocopper oxidase, putative, expressed -
4 Sobic.009G172950 - K02541: DNA replication licensing factor MCM3
5 Sobic.003G389100 formin-like protein 1 precursor, putative, expressed -
6 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
7 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
8 Sobic.001G051300 BEE 1, putative, expressed -
9 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
10 Sobic.001G123100 Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed K05350: beta-glucosidase
11 Sobic.005G157300 protein binding protein, putative, expressed -
12 Sobic.001G146900 expressed protein -
13 Sobic.002G383100 expressed protein -
14 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
15 Sobic.002G351700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
16 Sobic.010G177100 expressed protein -
17 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
18 Sobic.003G283600 HVA22, putative, expressed -
19 Sobic.003G444300 expressed protein K11550: SPBC25, kinetochore protein Spc25, animal type
20 Sobic.002G230800 expressed protein -


Gene co-expression network
sample Sobic010G079100 Sobic010G079100 Sobic003G289800 Sobic003G289800 Sobic010G079100--Sobic003G289800 Sobic003G412800 Sobic003G412800 Sobic010G079100--Sobic003G412800 Sobic001G369800 Sobic001G369800 Sobic010G079100--Sobic001G369800 Sobic009G172950 Sobic009G172950 Sobic010G079100--Sobic009G172950 Sobic003G389100 Sobic003G389100 Sobic010G079100--Sobic003G389100 Sobic001G169800 Sobic001G169800 Sobic010G079100--Sobic001G169800 Sobic003G183700 Sobic003G183700 Sobic010G079100--Sobic003G183700 Sobic001G051300 Sobic001G051300 Sobic010G079100--Sobic001G051300 Sobic003G179500 Sobic003G179500 Sobic010G079100--Sobic003G179500 Sobic002G383100 Sobic002G383100 Sobic003G289800--Sobic002G383100 Sobic009G087000 Sobic009G087000 Sobic003G289800--Sobic009G087000 Sobic003G289800--Sobic001G051300 Sobic003G289800--Sobic003G183700 Sobic003G420300 Sobic003G420300 Sobic003G289800--Sobic003G420300 Sobic003G289800--Sobic003G179500 Sobic005G110535 Sobic005G110535 Sobic003G289800--Sobic005G110535 Sobic003G289800--Sobic003G389100 Sobic010G147700 Sobic010G147700 Sobic003G289800--Sobic010G147700 Sobic003G412800--Sobic003G179500 Sobic003G412800--Sobic010G079100 Sobic003G412800--Sobic003G289800 Sobic010G103700 Sobic010G103700 Sobic003G412800--Sobic010G103700 Sobic003G412800--Sobic001G051300 Sobic009G119700 Sobic009G119700 Sobic003G412800--Sobic009G119700 Sobic010G151700 Sobic010G151700 Sobic003G412800--Sobic010G151700 Sobic002G351700 Sobic002G351700 Sobic003G412800--Sobic002G351700 Sobic009G189200 Sobic009G189200 Sobic003G412800--Sobic009G189200 Sobic002G284100 Sobic002G284100 Sobic001G369800--Sobic002G284100 Sobic001G487200 Sobic001G487200 Sobic001G369800--Sobic001G487200 Sobic001G123100 Sobic001G123100 Sobic001G369800--Sobic001G123100 Sobic001G540700 Sobic001G540700 Sobic001G369800--Sobic001G540700 Sobic006G218900 Sobic006G218900 Sobic001G369800--Sobic006G218900 Sobic009G212100 Sobic009G212100 Sobic001G369800--Sobic009G212100 Sobic003G283600 Sobic003G283600 Sobic001G369800--Sobic003G283600 Sobic003G351900 Sobic003G351900 Sobic001G369800--Sobic003G351900 Sobic001G212600 Sobic001G212600 Sobic001G369800--Sobic001G212600 Sobic009G172950--Sobic003G183700 Sobic009G172950--Sobic009G087000 Sobic003G032200 Sobic003G032200 Sobic009G172950--Sobic003G032200 Sobic003G444300 Sobic003G444300 Sobic009G172950--Sobic003G444300 Sobic001G083300 Sobic001G083300 Sobic009G172950--Sobic001G083300 Sobic009G184200 Sobic009G184200 Sobic009G172950--Sobic009G184200 Sobic004G321400 Sobic004G321400 Sobic009G172950--Sobic004G321400 Sobic001G105800 Sobic001G105800 Sobic009G172950--Sobic001G105800 Sobic001G146900 Sobic001G146900 Sobic009G172950--Sobic001G146900 Sobic003G389100--Sobic003G289800 Sobic003G226700 Sobic003G226700 Sobic003G389100--Sobic003G226700 Sobic003G389100--Sobic010G079100 Sobic003G389100--Sobic001G051300 Sobic007G084200 Sobic007G084200 Sobic003G389100--Sobic007G084200 Sobic003G389100--Sobic003G420300 Sobic002G276600 Sobic002G276600 Sobic003G389100--Sobic002G276600 Sobic007G139500 Sobic007G139500 Sobic003G389100--Sobic007G139500 Sobic001G425700 Sobic001G425700 Sobic003G389100--Sobic001G425700 Sobic001G456500 Sobic001G456500 Sobic001G169800--Sobic001G456500 Sobic006G116500 Sobic006G116500 Sobic001G169800--Sobic006G116500 Sobic001G169800--Sobic003G444300 Sobic001G169800--Sobic001G083300 Sobic002G223900 Sobic002G223900 Sobic001G169800--Sobic002G223900 Sobic001G169800--Sobic003G183700 Sobic001G169800--Sobic001G105800 Sobic004G355500 Sobic004G355500 Sobic001G169800--Sobic004G355500 Sobic001G169800--Sobic003G179500 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic001G051300--Sobic003G289800 Sobic001G051300--Sobic002G383100 Sobic001G051300--Sobic007G139500 Sobic001G051300--Sobic009G087000 Sobic006G071628 Sobic006G071628 Sobic001G051300--Sobic006G071628 Sobic001G051300--Sobic003G179500 Sobic001G051300--Sobic010G147700 Sobic003G017500 Sobic003G017500 Sobic001G051300--Sobic003G017500 Sobic003G201000 Sobic003G201000 Sobic001G051300--Sobic003G201000 Sobic003G179500--Sobic003G183700 Sobic003G179500--Sobic010G103700 Sobic010G105400 Sobic010G105400 Sobic003G179500--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic003G179500--Sobic006G116500 Sobic004G047100 Sobic004G047100 Sobic003G179500--Sobic004G047100
Octagon: transcription factors


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