Gene annotation
Transcriptome id Sobic.003G412800.1
Synonym Sb03g044720
Functional annotation Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32 (PubMedID : 28624908)
expressed protein
UniProt C5XH08
Pfam PF12576
Panther DB PTHR33645 PTHR33645:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19340 : Protein of unknown function (DUF3754)
RAP-DB (Rice) LOC_Os01g70390.1 : expressed protein
MaizeGDB (Corn) Zm00025a035161 , Zm00025a045797 , Zm00025a021459 , Zm00025a012976 , Zm00025a039216
Brachypodium KQK11333
Barley HORVU3Hr1G096650.19 , HORVU3Hr1G096650.18 , HORVU3Hr1G096650.13 , HORVU3Hr1G096650.12 , HORVU3Hr1G096650.11 , HORVU3Hr1G096650.10 , HORVU3Hr1G096650.17 , HORVU3Hr1G096650.16 , HORVU3Hr1G096650.15 , HORVU3Hr1G096650.14 , HORVU3Hr1G096650.9 , HORVU3Hr1G096650.8 , HORVU3Hr1G096650.3 , HORVU3Hr1G096650.2 , HORVU3Hr1G096650.1 , HORVU3Hr1G096650.7 , HORVU3Hr1G096650.6 , HORVU3Hr1G096650.5 , HORVU3Hr1G096650.4 , HORVU3Hr1G096650.22 , HORVU3Hr1G096650.23 , HORVU3Hr1G096650.20 , HORVU3Hr1G096650.21
Wheat TraesCS3A02G443600 , TraesCS3B02G477200 , TraesCS3D02G436000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
2 Sobic.010G079100 lysM domain-containing GPI-anchored protein 1 precursor, putative, expressed -
3 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
4 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
5 Sobic.001G051300 BEE 1, putative, expressed -
6 Sobic.009G119700 acetyltransferase, GNAT family, putative, expressed -
7 Sobic.010G151700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@extra-large G-protein-related, putative, expressed -
8 Sobic.002G351700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
9 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
10 Sobic.010G191000 expressed protein -
11 Sobic.006G102900 expressed protein -
12 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
13 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
14 Sobic.008G096200 AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
15 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
16 Sobic.002G315400 expressed protein -
17 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
18 Sobic.009G208900 expressed protein -
19 Sobic.002G146601 - -
20 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1


Gene co-expression network
sample Sobic003G412800 Sobic003G412800 Sobic003G179500 Sobic003G179500 Sobic003G412800--Sobic003G179500 Sobic010G079100 Sobic010G079100 Sobic003G412800--Sobic010G079100 Sobic003G289800 Sobic003G289800 Sobic003G412800--Sobic003G289800 Sobic010G103700 Sobic010G103700 Sobic003G412800--Sobic010G103700 Sobic001G051300 Sobic001G051300 Sobic003G412800--Sobic001G051300 Sobic009G119700 Sobic009G119700 Sobic003G412800--Sobic009G119700 Sobic010G151700 Sobic010G151700 Sobic003G412800--Sobic010G151700 Sobic002G351700 Sobic002G351700 Sobic003G412800--Sobic002G351700 Sobic009G189200 Sobic009G189200 Sobic003G412800--Sobic009G189200 Sobic003G183700 Sobic003G183700 Sobic003G179500--Sobic003G183700 Sobic003G179500--Sobic010G103700 Sobic010G105400 Sobic010G105400 Sobic003G179500--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic003G179500--Sobic005G144600 Sobic010G147700 Sobic010G147700 Sobic003G179500--Sobic010G147700 Sobic009G087000 Sobic009G087000 Sobic003G179500--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic003G179500--Sobic005G110535 Sobic006G116500 Sobic006G116500 Sobic003G179500--Sobic006G116500 Sobic004G047100 Sobic004G047100 Sobic003G179500--Sobic004G047100 Sobic010G079100--Sobic003G289800 Sobic010G079100--Sobic003G412800 Sobic001G369800 Sobic001G369800 Sobic010G079100--Sobic001G369800 Sobic009G172950 Sobic009G172950 Sobic010G079100--Sobic009G172950 Sobic003G389100 Sobic003G389100 Sobic010G079100--Sobic003G389100 Sobic001G169800 Sobic001G169800 Sobic010G079100--Sobic001G169800 Sobic010G079100--Sobic003G183700 Sobic010G079100--Sobic001G051300 Sobic010G079100--Sobic003G179500 Sobic002G383100 Sobic002G383100 Sobic003G289800--Sobic002G383100 Sobic003G289800--Sobic009G087000 Sobic003G289800--Sobic001G051300 Sobic003G289800--Sobic003G183700 Sobic003G420300 Sobic003G420300 Sobic003G289800--Sobic003G420300 Sobic003G289800--Sobic003G179500 Sobic003G289800--Sobic005G110535 Sobic003G289800--Sobic003G389100 Sobic003G289800--Sobic010G147700 Sobic010G103700--Sobic003G183700 Sobic010G103700--Sobic003G179500 Sobic006G120600 Sobic006G120600 Sobic010G103700--Sobic006G120600 Sobic006G195500 Sobic006G195500 Sobic010G103700--Sobic006G195500 Sobic006G051000 Sobic006G051000 Sobic010G103700--Sobic006G051000 Sobic010G103700--Sobic009G087000 Sobic010G103700--Sobic010G147700 Sobic010G103700--Sobic006G116500 Sobic004G355500 Sobic004G355500 Sobic010G103700--Sobic004G355500 Sobic001G051300--Sobic003G289800 Sobic001G051300--Sobic002G383100 Sobic007G139500 Sobic007G139500 Sobic001G051300--Sobic007G139500 Sobic001G051300--Sobic009G087000 Sobic006G071628 Sobic006G071628 Sobic001G051300--Sobic006G071628 Sobic001G051300--Sobic003G179500 Sobic001G051300--Sobic010G147700 Sobic003G017500 Sobic003G017500 Sobic001G051300--Sobic003G017500 Sobic003G201000 Sobic003G201000 Sobic001G051300--Sobic003G201000 Sobic002G303800 Sobic002G303800 Sobic009G119700--Sobic002G303800 Sobic001G146900 Sobic001G146900 Sobic009G119700--Sobic001G146900 Sobic009G119700--Sobic010G103700 Sobic009G119700--Sobic003G412800 Sobic009G119700--Sobic001G051300 Sobic003G444300 Sobic003G444300 Sobic009G119700--Sobic003G444300 Sobic009G119700--Sobic003G179500 Sobic009G119700--Sobic007G139500 Sobic009G119700--Sobic001G169800 Sobic008G083500 Sobic008G083500 Sobic010G151700--Sobic008G083500 Sobic006G124400 Sobic006G124400 Sobic010G151700--Sobic006G124400 Sobic010G151700--Sobic003G412800 Sobic006G281400 Sobic006G281400 Sobic010G151700--Sobic006G281400 Sobic010G151700--Sobic003G179500 Sobic010G151700--Sobic010G105400 Sobic010G151700--Sobic005G144600 Sobic003G423600 Sobic003G423600 Sobic010G151700--Sobic003G423600 Sobic002G296000 Sobic002G296000 Sobic010G151700--Sobic002G296000 Sobic003G226700 Sobic003G226700 Sobic002G351700--Sobic003G226700 Sobic004G321400 Sobic004G321400 Sobic002G351700--Sobic004G321400 Sobic002G351700--Sobic003G289800 Sobic002G351700--Sobic001G051300 Sobic001G123100 Sobic001G123100 Sobic002G351700--Sobic001G123100 Sobic002G351700--Sobic003G412800 Sobic003G292700 Sobic003G292700 Sobic002G351700--Sobic003G292700 Sobic002G351700--Sobic003G420300 Sobic002G351700--Sobic002G383100 Sobic006G102900 Sobic006G102900 Sobic009G189200--Sobic006G102900 Sobic001G261549 Sobic001G261549 Sobic009G189200--Sobic001G261549 Sobic002G057500 Sobic002G057500 Sobic009G189200--Sobic002G057500 Sobic010G144900 Sobic010G144900 Sobic009G189200--Sobic010G144900 Sobic007G044400 Sobic007G044400 Sobic009G189200--Sobic007G044400 Sobic004G285900 Sobic004G285900 Sobic009G189200--Sobic004G285900 Sobic003G084300 Sobic003G084300 Sobic009G189200--Sobic003G084300 Sobic003G122200 Sobic003G122200 Sobic009G189200--Sobic003G122200 Sobic001G131600 Sobic001G131600 Sobic009G189200--Sobic001G131600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.