Gene annotation
Transcriptome id Sobic.002G280200.1
Synonym ASK2, SKP1B, Sb02g031280
Functional annotation Skp1 family, dimerisation domain containing protein, expressed
UniProt C5X6W1
Pfam PF03931 PF01466
Panther DB PTHR11165 PTHR11165:SF59
NCBI CDD KOG1724; SCF ubiquitin ligase, Skp1 component
KEGG Orthology K03094; SKP1, S-phase kinase-associated protein 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT1G20140 : SKP1-like 4
RAP-DB (Rice) LOC_Os09g36830.1 : Skp1 family, dimerisation domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049318 , Zm00025a000002 , Zm00025a057660
Brachypodium KQJ98741 , KQJ91248
Barley HORVU3Hr1G089860.1 , HORVU3Hr1G089860.2 , HORVU3Hr1G089860.3 , HORVU3Hr1G089860.4 , HORVU3Hr1G089860.5 , HORVU2Hr1G115380.3 , HORVU2Hr1G115380.1 , HORVU2Hr1G115380.4 , HORVU2Hr1G115380.5 , HORVU2Hr1G115400.1 , HORVU2Hr1G115400.3 , HORVU2Hr1G115410.2 , HORVU2Hr1G115410.1 , HORVU7Hr1G103140.2 , HORVU7Hr1G103140.3 , HORVU7Hr1G103140.1 , HORVU6Hr1G000640.14 , HORVU6Hr1G000640.15 , HORVU6Hr1G000640.16 , HORVU6Hr1G000640.17 , HORVU6Hr1G000640.13 , HORVU6Hr1G000640.18 , HORVU6Hr1G000640.19 , HORVU2Hr1G115420.1 , HORVU6Hr1G000640.21 , HORVU6Hr1G000640.20
Wheat TraesCS4A02G472600 , TraesCS7A02G020600 , TraesCS7D02G016900 , TraesCS6D02G001600 , TraesCS3D02G016600 , TraesCS3B02G027600
Populus PNT38515 , PNT38514


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cDNA sequences
Sobic.002G280200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
2 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
3 Sobic.002G116200 adenylate kinase isoenzyme 6, putative, expressed K18532: AK6, adenylate kinase
4 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
5 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
6 Sobic.010G150575 - -
7 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
8 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
9 Sobic.006G131400 expressed protein -
10 Sobic.006G141500 expressed protein -
11 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
12 Sobic.003G368500 Yip1 domain containing protein, expressed -
13 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
14 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
15 Sobic.004G026200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.010G106200 signal recognition particle 9 kDa protein, putative, expressed K03109: signal recognition particle subunit SRP9
17 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
18 Sobic.009G217000 chaperone protein dnaJ 10, putative, expressed -
19 Sobic.004G265700 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
20 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20


Gene co-expression network
sample Sobic002G280200 Sobic002G280200 Sobic006G062800 Sobic006G062800 Sobic002G280200--Sobic006G062800 Sobic010G213400 Sobic010G213400 Sobic002G280200--Sobic010G213400 Sobic002G116200 Sobic002G116200 Sobic002G280200--Sobic002G116200 Sobic005G111100 Sobic005G111100 Sobic002G280200--Sobic005G111100 Sobic003G362400 Sobic003G362400 Sobic002G280200--Sobic003G362400 Sobic010G150575 Sobic010G150575 Sobic002G280200--Sobic010G150575 Sobic003G018600 Sobic003G018600 Sobic002G280200--Sobic003G018600 Sobic001G066700 Sobic001G066700 Sobic002G280200--Sobic001G066700 Sobic006G131400 Sobic006G131400 Sobic002G280200--Sobic006G131400 Sobic006G062800--Sobic010G213400 Sobic003G249800 Sobic003G249800 Sobic006G062800--Sobic003G249800 Sobic003G285800 Sobic003G285800 Sobic006G062800--Sobic003G285800 Sobic007G059900 Sobic007G059900 Sobic006G062800--Sobic007G059900 Sobic009G129000 Sobic009G129000 Sobic006G062800--Sobic009G129000 Sobic002G218000 Sobic002G218000 Sobic006G062800--Sobic002G218000 Sobic002G202300 Sobic002G202300 Sobic006G062800--Sobic002G202300 Sobic009G033700 Sobic009G033700 Sobic006G062800--Sobic009G033700 Sobic002G261900 Sobic002G261900 Sobic006G062800--Sobic002G261900 Sobic003G368500 Sobic003G368500 Sobic010G213400--Sobic003G368500 Sobic010G213400--Sobic003G249800 Sobic010G213400--Sobic009G033700 Sobic004G284500 Sobic004G284500 Sobic010G213400--Sobic004G284500 Sobic010G163600 Sobic010G163600 Sobic010G213400--Sobic010G163600 Sobic001G224400 Sobic001G224400 Sobic010G213400--Sobic001G224400 Sobic010G213400--Sobic006G062800 Sobic001G445800 Sobic001G445800 Sobic010G213400--Sobic001G445800 Sobic010G153100 Sobic010G153100 Sobic010G213400--Sobic010G153100 Sobic002G116200--Sobic003G362400 Sobic002G116200--Sobic005G111100 Sobic005G157200 Sobic005G157200 Sobic002G116200--Sobic005G157200 Sobic002G078400 Sobic002G078400 Sobic002G116200--Sobic002G078400 Sobic003G321700 Sobic003G321700 Sobic002G116200--Sobic003G321700 Sobic002G116200--Sobic001G445800 Sobic004G300900 Sobic004G300900 Sobic002G116200--Sobic004G300900 Sobic001G128400 Sobic001G128400 Sobic002G116200--Sobic001G128400 Sobic001G331900 Sobic001G331900 Sobic002G116200--Sobic001G331900 Sobic005G111100--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic005G111100--Sobic003G129800 Sobic004G032000 Sobic004G032000 Sobic005G111100--Sobic004G032000 Sobic004G066800 Sobic004G066800 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic007G152400 Sobic007G152400 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic006G231700 Sobic006G231700 Sobic005G111100--Sobic006G231700 Sobic005G111100--Sobic002G218000 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic003G362400--Sobic005G111100 Sobic003G362400--Sobic002G116200 Sobic003G362400--Sobic001G331900 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic001G011200 Sobic001G011200 Sobic010G150575--Sobic001G011200 Sobic010G150575--Sobic003G321700 Sobic001G016400 Sobic001G016400 Sobic010G150575--Sobic001G016400 Sobic001G091801 Sobic001G091801 Sobic010G150575--Sobic001G091801 Sobic004G198400 Sobic004G198400 Sobic010G150575--Sobic004G198400 Sobic002G374900 Sobic002G374900 Sobic010G150575--Sobic002G374900 Sobic009G166500 Sobic009G166500 Sobic010G150575--Sobic009G166500 Sobic001G018800 Sobic001G018800 Sobic010G150575--Sobic001G018800 Sobic004G145801 Sobic004G145801 Sobic010G150575--Sobic004G145801 Sobic002G286900 Sobic002G286900 Sobic003G018600--Sobic002G286900 Sobic006G115000 Sobic006G115000 Sobic003G018600--Sobic006G115000 Sobic003G018600--Sobic009G166500 Sobic001G377800 Sobic001G377800 Sobic003G018600--Sobic001G377800 Sobic005G110800 Sobic005G110800 Sobic003G018600--Sobic005G110800 Sobic009G050300 Sobic009G050300 Sobic003G018600--Sobic009G050300 Sobic006G137100 Sobic006G137100 Sobic003G018600--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic003G018600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic003G018600--Sobic003G249700 Sobic003G358300 Sobic003G358300 Sobic001G066700--Sobic003G358300 Sobic003G403400 Sobic003G403400 Sobic001G066700--Sobic003G403400 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic010G266300 Sobic010G266300 Sobic001G066700--Sobic010G266300 Sobic003G233500 Sobic003G233500 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic009G070200 Sobic009G070200 Sobic001G066700--Sobic009G070200 Sobic001G516600 Sobic001G516600 Sobic006G131400--Sobic001G516600 Sobic003G094200 Sobic003G094200 Sobic006G131400--Sobic003G094200 Sobic002G343500 Sobic002G343500 Sobic006G131400--Sobic002G343500 Sobic006G131400--Sobic003G285800 Sobic006G131400--Sobic009G033700 Sobic004G318100 Sobic004G318100 Sobic006G131400--Sobic004G318100 Sobic006G131400--Sobic009G129000 Sobic001G107400 Sobic001G107400 Sobic006G131400--Sobic001G107400 Sobic004G036600 Sobic004G036600 Sobic006G131400--Sobic004G036600
Octagon: transcription factors


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