Hb_006642_010

Information

Type -
Description -
Location Contig6642: 3646-4708
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006642_010 0.0 - - -
2 Hb_111985_020 0.0557405603 - - -
3 Hb_002659_100 0.0572463481 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
4 Hb_000640_010 0.061401534 - - PREDICTED: histidine kinase CKI1 [Jatropha curcas]
5 Hb_011639_140 0.0632867663 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
6 Hb_011010_010 0.0636308586 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_003147_030 0.0694576305 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
8 Hb_138358_010 0.0696904268 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
9 Hb_004642_010 0.0700517932 - - Integrase core domain, putative [Oryza sativa Japonica Group]
10 Hb_000270_570 0.0725912214 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
11 Hb_004724_110 0.0735842793 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
12 Hb_000922_230 0.0769369766 - - -
13 Hb_001768_030 0.0787037694 - - -
14 Hb_001013_020 0.0790725014 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001827_020 0.08263947 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_011269_050 0.0834172215 - - -
17 Hb_077421_010 0.0853026294 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
18 Hb_002028_080 0.0855182118 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
19 Hb_000017_010 0.085917383 - - -
20 Hb_003494_170 0.0862800682 - - -

Gene co-expression network

sample Hb_006642_010 Hb_006642_010 Hb_111985_020 Hb_111985_020 Hb_006642_010--Hb_111985_020 Hb_002659_100 Hb_002659_100 Hb_006642_010--Hb_002659_100 Hb_000640_010 Hb_000640_010 Hb_006642_010--Hb_000640_010 Hb_011639_140 Hb_011639_140 Hb_006642_010--Hb_011639_140 Hb_011010_010 Hb_011010_010 Hb_006642_010--Hb_011010_010 Hb_003147_030 Hb_003147_030 Hb_006642_010--Hb_003147_030 Hb_111985_020--Hb_002659_100 Hb_111985_020--Hb_000640_010 Hb_111985_020--Hb_011639_140 Hb_111985_020--Hb_011010_010 Hb_001013_020 Hb_001013_020 Hb_111985_020--Hb_001013_020 Hb_002659_100--Hb_000640_010 Hb_002659_100--Hb_011639_140 Hb_002659_100--Hb_011010_010 Hb_002659_100--Hb_001013_020 Hb_000640_010--Hb_011639_140 Hb_000640_010--Hb_011010_010 Hb_000640_010--Hb_001013_020 Hb_011639_140--Hb_011010_010 Hb_011639_140--Hb_001013_020 Hb_011010_010--Hb_001013_020 Hb_138358_010 Hb_138358_010 Hb_003147_030--Hb_138358_010 Hb_004642_010 Hb_004642_010 Hb_003147_030--Hb_004642_010 Hb_000270_570 Hb_000270_570 Hb_003147_030--Hb_000270_570 Hb_004724_110 Hb_004724_110 Hb_003147_030--Hb_004724_110 Hb_000922_230 Hb_000922_230 Hb_003147_030--Hb_000922_230 Hb_001768_030 Hb_001768_030 Hb_003147_030--Hb_001768_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.127768 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0647552 0

CAGE analysis