Hb_004724_110

Information

Type -
Description -
Location Contig4724: 101045-108078
Sequence    

Annotation

kegg
ID rcu:RCOM_0621480
description Galactoside 2-alpha-L-fucosyltransferase, putative (EC:2.4.1.69)
nr
ID ABS70455.1
description alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
swissprot
ID Q9M5Q1
description Galactoside 2-alpha-L-fucosyltransferase OS=Pisum sativum GN=FT1 PE=2 SV=1
trembl
ID A7LIE7
description Alpha-1,2-fucosyltransferase OS=Populus canescens GN=FUT4 PE=2 SV=1
Gene Ontology
ID GO:0016020
description galactoside 2-alpha-l-fucosyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44329: 97686-100471
cDNA
(Sanger)
(ID:Location)		 040_C05.ab1: 97699-100289 , 040_M24.ab1: 97699-100272

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_110 0.0 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
2 Hb_000270_570 0.0009950819 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
3 Hb_000922_230 0.0033599198 - - -
4 Hb_004642_010 0.0035394454 - - Integrase core domain, putative [Oryza sativa Japonica Group]
5 Hb_138358_010 0.0039014859 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
6 Hb_003147_030 0.0041347128 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
7 Hb_001768_030 0.0051307595 - - -
8 Hb_001827_020 0.0090760691 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_011269_050 0.0098558163 - - -
10 Hb_077421_010 0.011746194 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
11 Hb_002028_080 0.0119623566 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
12 Hb_000017_010 0.0123626085 - - -
13 Hb_003494_170 0.0127262828 - - -
14 Hb_004994_060 0.0152911386 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
15 Hb_007945_040 0.0461167682 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_006642_010 0.0735842793 - - -
17 Hb_111985_020 0.1291011904 - - -
18 Hb_002659_100 0.1305979433 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
19 Hb_000640_010 0.1347273317 - - PREDICTED: histidine kinase CKI1 [Jatropha curcas]
20 Hb_011639_140 0.1366004371 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_110 Hb_004724_110 Hb_000270_570 Hb_000270_570 Hb_004724_110--Hb_000270_570 Hb_000922_230 Hb_000922_230 Hb_004724_110--Hb_000922_230 Hb_004642_010 Hb_004642_010 Hb_004724_110--Hb_004642_010 Hb_138358_010 Hb_138358_010 Hb_004724_110--Hb_138358_010 Hb_003147_030 Hb_003147_030 Hb_004724_110--Hb_003147_030 Hb_001768_030 Hb_001768_030 Hb_004724_110--Hb_001768_030 Hb_000270_570--Hb_004642_010 Hb_000270_570--Hb_138358_010 Hb_000270_570--Hb_003147_030 Hb_000270_570--Hb_000922_230 Hb_000270_570--Hb_001768_030 Hb_000922_230--Hb_001768_030 Hb_001827_020 Hb_001827_020 Hb_000922_230--Hb_001827_020 Hb_011269_050 Hb_011269_050 Hb_000922_230--Hb_011269_050 Hb_000922_230--Hb_004642_010 Hb_004642_010--Hb_138358_010 Hb_004642_010--Hb_003147_030 Hb_004642_010--Hb_001768_030 Hb_138358_010--Hb_003147_030 Hb_138358_010--Hb_000922_230 Hb_138358_010--Hb_001768_030 Hb_003147_030--Hb_000922_230 Hb_003147_030--Hb_001768_030 Hb_001768_030--Hb_001827_020 Hb_001768_030--Hb_011269_050 Hb_077421_010 Hb_077421_010 Hb_001768_030--Hb_077421_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0252807 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0183307 0

CAGE analysis